Evidence map›Paper›PMID 20852632›Full record

ArticleNature genetics2010

A genome-wide association study identifies susceptibility loci for ovarian cancer at 2q31 and 8q24.

Ellen L Goode, Georgia Chenevix-Trench, Honglin Song, Susan J Ramus, Maria Notaridou, Kate Lawrenson, Martin Widschwendter, Robert A Vierkant, Melissa C Larson, Susanne K Kjaer and 107 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nature genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 221 papers, 12 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
221citing papers in PubMed, 12 pooled it
35.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

221 citing papers in PubMed, 12 syntheses or guidelines pooled it, 351 citations in OpenAlex.

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  6. Network-Based Integration of GWAS and Gene Expression Identifies a HOX-Centric Network Associated with Serous Ovarian Cancer Risk.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2015
    Pooled it
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  10. Combined and interactive effects of environmental and GWAS-identified risk factors in ovarian cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2013
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  20. BeyondmedRxiv : the preprint server for health sciences · 2025
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161 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

117 authors at 20 institutions in 11 countries.

Ellen L GoodeDepartment of Health Sciences Research, Mayo Clinic College of Medicine, Rochester, Minnesota, USA.
Georgia Chenevix-Trench
Honglin Song
Susan J Ramus
Maria Notaridou
Kate Lawrenson
Martin Widschwendter
Robert A Vierkant
Melissa C Larson
Susanne K Kjaer
Michael J Birrer
Andrew Berchuck
Joellen Schildkraut
Ian Tomlinson
Lambertus A Kiemeney
Linda S Cook
Jacek Gronwald
Montserrat Garcia-Closas
Martin E Gore
Ian Campbell
Alice S Whittemore
Rebecca Sutphen
Catherine Phelan
Hoda Anton-Culver
Celeste Leigh Pearce
Diether Lambrechts
Mary Anne Rossing
Jenny Chang-Claude
Kirsten B Moysich
Marc T Goodman
Thilo Dörk
Heli Nevanlinna
Roberta B Ness
Thorunn Rafnar
Claus Hogdall
Estrid Hogdall
Brooke L Fridley
Julie M Cunningham
Weiva Sieh
Valerie McGuire
Andrew K Godwin
Daniel W Cramer
Dena Hernandez
Douglas Levine
Karen Lu
Edwin S Iversen
Rachel T Palmieri
Richard Houlston
Anne M van Altena
Katja K H Aben
Leon F A G Massuger
Angela Brooks-Wilson
Linda E Kelemen
Nhu D Le
Anna Jakubowska
Jan Lubinski
Krzysztof Medrek
Anne Stafford
Douglas F Easton
Jonathan Tyrer
Kelly L Bolton
Patricia Harrington
Diana Eccles
Ann Chen
Ashley N Molina
Barbara N Davila
Hector Arango
Ya-Yu Tsai
Zhihua Chen
Harvey A Risch
John McLaughlin
Steven A Narod
Argyrios Ziogas
Wendy Brewster
Aleksandra Gentry-Maharaj
Usha Menon
Anna H Wu
Daniel O Stram
Malcolm C Pike
Wellcome Trust Case-Control Consortium
Jonathan Beesley
Penelope M Webb
Australian Cancer Study (Ovarian Cancer)
Australian Ovarian Cancer Study Group
Ovarian Cancer Association Consortium (OCAC)
Xiaoqing Chen
Arif B Ekici
Falk C Thiel
Matthias W Beckmann
Hannah Yang
Nicolas Wentzensen
Jolanta Lissowska
Peter A Fasching
Evelyn Despierre
Frederic Amant
Ignace Vergote
Jennifer Doherty
Rebecca Hein
Shan Wang-Gohrke
Galina Lurie
Michael E Carney
Pamela J Thompson
Ingo Runnebaum
Peter Hillemanns
Matthias Dürst
Natalia Antonenkova
Natalia Bogdanova
Arto Leminen
Ralf Butzow
Tuomas Heikkinen
Kari Stefansson
Patrick Sulem
Sören Besenbacher
Thomas A Sellers
Simon A Gayther
Paul D P Pharoah
Ovarian Cancer Association Consortium (OCAC)
University College London · GBUniversity of Cambridge · GBMayo Clinic · USMoffitt Cancer Center · USUniversity of Southern California · USInternational Hereditary Cancer Center · PLQIMR Berghofer Medical Research Institute · AURadboud University Nijmegen · NLStanford University · USUniversity of South Florida · USBC Cancer Agency · CADuke Medical Center · USNational Institutes of Health · USRigshospitalet · DKUniversity of California, Irvine · USUniversity of New Mexico · USUniversity of North Carolina at Chapel Hill · USAlberta Health Services · CABrigham and Women's Hospital · USCancer Care Ontario · CA

Funding

USC/NORRIS COMPREHENSIVE CANCER CENTER (CORE) SUPPORTP30CA014089 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Fumito Ito · 1985 to 2026
$181.4M
Use of microfluidic tumor cultures to enable clinical trials of therapies for ovarian cancerP50CA136393 · NCI · MAYO CLINIC ROCHESTER · PI Zhenkun Lou · 2009 to 2026
$37.0M
Therapeutic Micro RNA Strategies for Ovarian CancerP50CA083638 · NCI · RESEARCH INST OF FOX CHASE CAN CTR · PI GODWIN, ANDREW K., GOLEMIS, ERICA A. · 1999 to 2013
$33.6M
GENETIC SUSCEPTIBILITY TO CANCER IN MULTIETHNIC COHORTSR01CA063464 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HENDERSON, BRIAN E · 2001 to 2005
$23.2M
USC CANCER EPIDEMIOLOGY &BIOSTATISTICS UNITP01CA017054 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DEAPEN, DENNIS M. · 1985 to 2009
$18.2M
Haplotype-Based Genome Screen for Ovarian Cancer LociR01CA114343 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI SELLERS, THOMAS A · 2007 to 2011
$7.5M
The Molecular Epidemiology Of Ovarian CancerR01CA076016 · NCI · DUKE UNIVERSITY · PI SCHILDKRAUT, JOELLEN M. · 1998 to 2010
$6.2M
COLLABORATIVE STUDY OF OVARIAN CANCER IN TWO RISK GROUPSR01CA058598 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI GOODMAN, MARC T · 1993 to 2012
$4.6M
Epidemiology of Ovarian Cancer:New HypothesesR01CA087538 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ROSSING, MARY ANNE · 2002 to 2006
$3.5M
Steroid Hormone Genes and Ovarian Cancer RiskR01CA112523 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI ROSSING, MARY ANNE · 2006 to 2010
$3.3M
HEREDITARY BREAST CANCER--GENETIC AND MOLECULAR STUDIESR01CA058860 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANTON-CULVER, HODA A · 1994 to 2008
$3.1M
Population-Based Analysis of Ovarian Cancer BiomarkersR01CA106414 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI SUTPHEN, REBECCA · 2005 to 2009
$3.0M
Cancer Research UK 10118Cancer Research UK 10119Cancer Research UK 10124Cancer Research UK 11022Cancer Research UK A10119Cancer Research UK A10124Intramural NIH HHSMedical Research Council G0801875NCI NIH HHS CA14089NCI NIH HHS CA17054NCI NIH HHS CA-58860NCI NIH HHS CA61132NCI NIH HHS CA-92044NCI NIH HHS K07 CA092044NCI NIH HHS K07 CA143047NCI NIH HHS N01 PC035137NCI NIH HHS N01 PC067010NCI NIH HHS P01 CA017054NCI NIH HHS P30 CA014089NCI NIH HHS P50 CA083638NCI NIH HHS P50 CA136393NCI NIH HHS R01 CA058598NCI NIH HHS R01 CA058860NCI NIH HHS R01 CA063464NCI NIH HHS R01 CA063678NCI NIH HHS R01 CA063682NCI NIH HHS R01 CA076016NCI NIH HHS R01 CA087538NCI NIH HHS R01 CA106414NCI NIH HHS R01-CA-106414NCI NIH HHS R01 CA112523NCI NIH HHS R01-CA-112523NCI NIH HHS R01 CA114343NCI NIH HHS R01-CA-114343NCI NIH HHS R01 CA122443NCI NIH HHS R01-CA-122443NCI NIH HHS R01 CA140323NCI NIH HHS R01-CA-58598NCI NIH HHS R01-CA-63678NCI NIH HHS R01-CA-63682NCI NIH HHS R01-CA-76016NCI NIH HHS R01-CA-87538NCI NIH HHS R03 CA113148NCI NIH HHS R03-CA113148NCI NIH HHS U01 CA058860NCI NIH HHS U01 CA063464Wellcome TrustWellcome Trust 076113
6 · The paper itself

Abstract

Ovarian cancer accounts for more deaths than all other gynecological cancers combined. To identify common low-penetrance ovarian cancer susceptibility genes, we conducted a genome-wide association study of 507,094 SNPs in 1,768 individuals with ovarian cancer (cases) and 2,354 controls, with follow up of 21,955 SNPs in 4,162 cases and 4,810 controls, leading to the identification of a confirmed susceptibility locus at 9p22 (in BNC2). Here, we report on nine additional candidate loci (defined as having P ≤ 10⁻⁴) identified after stratifying cases by histology, which we genotyped in an additional 4,353 cases and 6,021 controls. We confirmed two new susceptibility loci with P ≤ 5 × 10⁻⁸ (8q24, P = 8.0 × 10⁻¹⁵ and 2q31, P = 3.8 × 10⁻¹⁴) and identified two additional loci that approached genome-wide significance (3q25, P = 7.1 × 10⁻⁸ and 17q21, P = 1.4 × 10⁻⁷). The associations of these loci with serous ovarian cancer were generally stronger than with other cancer subtypes. Analysis of HOXD1, MYC, TIPARP and SKAP1 at these loci and of BNC2 at 9p22 supports a functional role for these genes in ovarian cancer development.

Indexed as

Genetic Predisposition to DiseaseGenome, HumanGenome-Wide Association StudyBiomarkers, TumorCase-Control StudiesChromosomes, Human, Pair 2Chromosomes, Human, Pair 8Clinical Trials, Phase I as TopicClinical Trials, Phase II as TopicDNA-Binding ProteinsFemaleGenotypeHomeodomain ProteinsHumansOvarian NeoplasmsOvaryBiomarkers, TumorBNC2 protein, humanDNA-Binding ProteinsHomeodomain ProteinsHOXD1 protein, humanPhosphoproteinsProto-Oncogene Proteins c-mybSKAP1 protein, human

Identifiers

PMID20852632
PMCPMC3020231
OpenAlexW2148512375

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.