Evidence map›Paper›PMID 20852066›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Induction of long interspersed nucleotide element-1 (L1) retrotransposition by 6-formylindolo[3,2-b]carbazole (FICZ), a tryptophan photoproduct.

Noriyuki Okudaira, Kenta Iijima, Takayoshi Koyama, Yuzuru Minemoto, Shigeyuki Kano, Akio Mimori, Yukihito Ishizaka

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 43 citations in OpenAlex.

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  12. New Trends in Aryl Hydrocarbon Receptor Biology.Frontiers in cell and developmental biology · 2016
    Review
  13. Article
  14. Article
  15. Phosphorylation of ORF1p is required for L1 retrotransposition.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Noriyuki OkudairaNational Center for Global Health and Medicine, Shinjuku-ku, Tokyo 162-8655, Japan.
Kenta Iijima
Takayoshi Koyama
Yuzuru Minemoto
Shigeyuki Kano
Akio Mimori
Yukihito Ishizaka
National Center for Global Health and Medicine · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long interspersed nucleotide element-1 (L1) is a retroelement comprising about 17% of the human genome, of which 80-100 copies are competent as mobile elements (retrotransposition: L1-RTP). Although the genetic structures modified during L1-RTP have been clarified, little is known about the cellular signaling cascades involved. Herein we found that 6-formylindolo[3,2-b]carbazole (FICZ), a tryptophan photoproduct postulated as a candidate physiological ligand of the aryl hydrocarbon receptor (AhR), induces L1-RTP. Notably, RNA-interference experiments combined with back-transfection of siRNA-resistant cDNAs revealed that the induction of L1-RTP by FICZ is dependent on AhR nuclear translocator-1 (ARNT1), a binding partner of AhR, and the activation of cAMP-responsive element-binding protein. However, our extensive analyses suggested that AhR is not required for L1-RTP. FICZ stimulated the interaction of the L1-encoded open reading frame-1 (ORF1) and ARNT1, and recruited ORF1 to chromatin in a manner dependent on the activation of mitogen-activated protein kinase. Along with our additional observations that the cellular cascades for FICZ-induced L1-RTP were different from those of L1-RTP triggered by DNA damage, we propose that the presence of the cellular machinery of ARNT1 mediates L1-RTP. A possible role of ARNT1-mediated L1-RTP in the adaptation of living organisms to environmental changes is discussed.

Indexed as

Aryl Hydrocarbon Receptor Nuclear TranslocatorBase SequenceCarbazolesCell LineChromatinCyclic AMP Response Element-Binding ProteinDNA PrimersDown-RegulationHeLa CellsHumansLigandsLong Interspersed Nucleotide ElementsMAP Kinase Signaling SystemPhotolysisProteinsReceptors, Aryl Hydrocarbon6-formylindolo(3,2-b)carbazoleARNT protein, humanAryl Hydrocarbon Receptor Nuclear TranslocatorCarbazolesChromatinCREB1 protein, humanCyclic AMP Response Element-Binding ProteinDNA PrimersLigandsORF1 protein, humanProteinsReceptors, Aryl HydrocarbonRNA, MessengerRNA, Small InterferingTryptophan

Identifiers

PMID20852066
PMCPMC2973001
OpenAlexW2031426795

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.