Evidence map›Paper›PMID 20852037›Full record

ArticleThe journal of histochemistry and cytochemistry : official journal of the Histochemistry Society2010

Site-specific differences in gene expression of secreted proteins in the mouse lung: comparison of methods to show differences by location.

Katherine M Sutherland, Trenton J Combs, Patricia C Edwards, Laura S Van Winkle

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Metabolism and Lung Toxicity of Inhaled Naphthalene: Effects of Postnatal Age and Sex.Toxicological sciences : an official journal of the Society of Toxicology · 2019
    Article
  3. Article
  4. Ozone-induced airway epithelial cell death, the neurokinin-1 receptor pathway, and the postnatal developing lung.American journal of physiology. Lung cellular and molecular physiology · 2014
    Article
  5. Ozone exposure alters serotonin and serotonin receptor expression in the developing lung.Toxicological sciences : an official journal of the Society of Toxicology · 2013
    Article
  6. Article
  7. Postnatal exposure history and airways: oxidant stress responses in airway explants.American journal of respiratory cell and molecular biology · 2012
    Article
  8. Sex differences in the development of airway epithelial tolerance to naphthalene.American journal of physiology. Lung cellular and molecular physiology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Katherine M SutherlandCenter for Health and the Environment, University of California-Davis, Davis, CA 95616-8732, USA.
Trenton J Combs
Patricia C Edwards
Laura S Van Winkle
University of California, Davis · US

Funding

ENVIRONMENTAL TOXICOLOGYT32ES007059 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura S Van Winkle · 1985 to 2026
$7.9M
Gonadal vs. Genomic Influences on Xenobiotic MetabolismR01ES012720 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI VAN WINKLE, LAURA S · 2005 to 2008
$969k
Acquisition of LMD6000 Laser Microdissection UnitS10RR023555 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI VAN WINKLE, LAURA S · 2008 to 2008
$244k
NCRR NIH HHS S10 RR023555NIEHS NIH HHS ES007059NIEHS NIH HHS R01 ES012720NIEHS NIH HHS T32 ES007059
6 · The paper itself

Abstract

Studies on the effects of pulmonary toxicants on the lung often overlook the fact that site-specific changes are likely to occur in response to chemical exposure. These changes can be highly focal and may be undetected by methods that do not examine specific lung regions. This problem is especially acute for studies of the conducting airways. In this study, differential gene expression of secreted proteins in the lung by different methods of collection (whole lung, gross airway microdissection, and laser capture microdissection) and by airway levels (whole lobe, whole airway tree, proximal airways, airway bifurcations, and terminal bronchioles) was examined. Site-specific sampling approaches were combined with methods to detect both gene and corresponding protein expression in different lung regions. Differential expression of mRNA by both airway level and lung region was determined for Clara cell secretory protein, calcitonin gene-related peptide, uteroglobin-related protein 2, surfactant protein A, and surfactant protein C. Therefore, for maximal enrichment of mRNA and maximal ability to identify changes in mRNA levels in the diseased state or in response to chemical exposure, it is critical to choose the appropriate airway region and sample collection method to enrich detection of the transcript(s) of interest.

Indexed as

Gene Expression ProfilingAnimalsCalcitonin Gene-Related PeptideImmunohistochemistryLungMaleMiceOrgan SpecificityProteinsPulmonary Surfactant-Associated Protein APulmonary Surfactant-Associated Protein CReverse Transcriptase Polymerase Chain ReactionRNA, MessengerUteroglobinCalcitonin Gene-Related PeptideProteinsPulmonary Surfactant-Associated Protein APulmonary Surfactant-Associated Protein CRNA, MessengerScgb1a1 protein, mouseUGRP2 protein, mouseUteroglobin

Identifiers

PMID20852037
PMCPMC2989247
OpenAlexW2030658109

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.