Evidence map›Paper›PMID 20849859›Full record

ArticleInternational journal for parasitology2011

Non-random organization of the Biomphalaria glabrata genome in interphase Bge cells and the spatial repositioning of activated genes in cells co-cultured with Schistosoma mansoni.

Matty Knight, Wannaporn Ittiprasert, Edwin C Odoemelam, Coen M Adema, André Miller, Nithya Raghavan, Joanna M Bridger

Abstract read
In one paragraph

Article in International journal for parasitology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.8field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Comparative immunogenomics of molluscs.Developmental and comparative immunology · 2017
    Review
  5. Article
  6. Article
  7. Locus-specific gene repositioning in prostate cancer.Molecular biology of the cell · 2016
    Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. A conserved set of maternal genes? Insights from a molluscan transcriptome.The International journal of developmental biology · 2014
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Matty KnightBiomedical Research Institute, 12111 Parklawn Dr. Rockville, MD 20852, USA. mknight@afbr-bri.com
Wannaporn Ittiprasert
Edwin C Odoemelam
Coen M Adema
André Miller
Nithya Raghavan
Joanna M Bridger
Biomedical Research Institute · USBrunel University of London · GBUniversity of New Mexico · US

Funding

UNM COBRE: THEORETICAL STUDY OF SPECIFICITY OF RNA SILENCING MECHANISMP20RR018754 · NCRR · UNIVERSITY OF NEW MEXICO · PI LOKER, ERIC SAMUEL · 2003 to 2011
$16.7M
A gene map for Biomphalaria glabrata, a S. mansoni hostR01AI063480 · NIAID · BIOMEDICAL RESEARCH INSTITUTE · PI KNIGHT, MATTY · 2005 to 2009
$2.8M
Anti-pathogen responses in Biomphalaria glabrataR01AI052363 · NIAID · UNIVERSITY OF NEW MEXICO · PI ADEMA, COENRAAD M · 2003 to 2010
$2.0M
Anti-pathogen responses in Biomphalaria glabrataR56AI052363 · NIAID · UNIVERSITY OF NEW MEXICO · PI ADEMA, COENRAAD M · 2008 to 2008
$338k
NCRR NIH HHS 1P20RR18754NCRR NIH HHS P20 RR018754NIAID NIH HHS AI52363NIAID NIH HHS AI63480NIAID NIH HHS R01 AI052363NIAID NIH HHS R01 AI063480NIAID NIH HHS R56 AI052363
6 · The paper itself

Abstract

Biomphalaria glabrata is a major intermediate host for the parasitic trematode Schistosoma mansoni, a causative agent of human schistosomiasis. To decipher the molecular basis of this host-parasite interaction, the Bge embryonic cell line provides a unique in vitro model system to assess whether interactions between the snail and parasite affect the cell and genome biology in either organism. The organization of the B. glabrata genome in Bge cells was studied using image analysis through positioning territories of differently sized chromosomes within cell nuclei. The snail chromosome territories are similar in morphology as well as in non-random radial positioning as those found in other derived protostome and deuterostome organisms. Specific monitoring of four gene loci, piwi, BgPrx, actin and ferritin, revealed non-random radial positioning of the genome. This indicates that specific parts of the snail genome reside in reproducible nuclear addresses. To determine whether exposure to parasite is reflected in genome organization, the interphase spatial positioning of genes was assessed after co-culturing Bge cells with either normal or irradiation attenuated miracidia for 30 min to 24 h. The loci of actin and ferritin, genes that are up-regulated in the snail when subjected to infection, were visualized by fluorescence in situ hybridisation (FISH) and their radial nuclear positions i.e. their position in the interphase nucleus with respect to the nuclear edge/envelope, mapped. Interestingly, large scale gene repositioning correlated to temporal kinetics of gene expression levels in Bge cells co-cultured with normal miracidia while irradiated parasites failed to elicit similar gene expression or gene loci repositioning as demonstrated using the ferritin gene. This indicates that normal but not attenuated schistosomes provide stimuli that evoke host responses that are reflected in the host's nuclear architecture. We believe that this is not only the first time that gene-repositioning studies have been attempted in a mollusc but also demonstrates a parasite influencing the interphase genome organization of its host.

Indexed as

Gene RearrangementHost-Parasite InteractionsInterphaseAnimalsBiomphalariaCells, CulturedCoculture TechniquesGenetic LociIn Situ Hybridization, FluorescenceSchistosoma mansoni

Identifiers

PMID20849859
PMCPMC3081665
OpenAlexW2069893981

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.