Evidence map›Paper›PMID 20849449›Full record

ArticleEnvironmental microbiology2011

A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T.

Karin Schwibbert, Alberto Marin-Sanguino, Irina Bagyan, Gabriele Heidrich, Georg Lentzen, Harald Seitz, Markus Rampp, Stephan C Schuster, Hans-Peter Klenk, Friedhelm Pfeiffer and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Environmental microbiology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 137 papers.

0numbers the graph read from it
0cells of the map it votes in
137citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

137 citing papers in PubMed, 268 citations in OpenAlex.

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77 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Karin SchwibbertMaterials and Environment Division, Federal Institute for Materials Research and Testing (BAM), Berlin, Germany.
Alberto Marin-Sanguino
Irina Bagyan
Gabriele Heidrich
Georg Lentzen
Harald Seitz
Markus Rampp
Stephan C Schuster
Hans-Peter Klenk
Friedhelm Pfeiffer
Dieter Oesterhelt
Hans Jörg Kunte
Federal Institute For Materials Research and Testing · DEBitop (Germany) · DEMax Planck Institute of Biochemistry · DEMax Planck Society · DELeibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures · DEMax Planck Institute for Molecular Genetics · DEPennsylvania State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The halophilic γ-proteobacterium Halomonas elongata DSM 2581(T) thrives at high salinity by synthesizing and accumulating the compatible solute ectoine. Ectoine levels are highly regulated according to external salt levels but the overall picture of its metabolism and control is not well understood. Apart from its critical role in cell adaptation to halophilic environments, ectoine can be used as a stabilizer for enzymes and as a cell protectant in skin and health care applications and is thus produced annually on a scale of tons in an industrial process using H. elongata as producer strain. This paper presents the complete genome sequence of H. elongata (4,061,296 bp) and includes experiments and analysis identifying and characterizing the entire ectoine metabolism, including a newly discovered pathway for ectoine degradation and its cyclic connection to ectoine synthesis. The degradation of ectoine (doe) proceeds via hydrolysis of ectoine (DoeA) to Nα-acetyl-L-2,4-diaminobutyric acid, followed by deacetylation to diaminobutyric acid (DoeB). In H. elongata, diaminobutyric acid can either flow off to aspartate or re-enter the ectoine synthesis pathway, forming a cycle of ectoine synthesis and degradation. Genome comparison revealed that the ectoine degradation pathway exists predominantly in non-halophilic bacteria unable to synthesize ectoine. Based on the resulting genetic and biochemical data, a metabolic flux model of ectoine metabolism was derived that can be used to understand the way H. elongata survives under varying salt stresses and that provides a basis for a model-driven improvement of industrial ectoine production.

Indexed as

Amino Acids, DiaminoAnimalsBacteriaGene Expression Regulation, BacterialGene OrderGenes, BacterialGenome, BacterialHalomonasIndustrial MicrobiologyPhylogenyProtein BiosynthesisSalt ToleranceAmino Acids, Diaminoectoine

Identifiers

PMID20849449
PMCPMC3187862
OpenAlexW1606892626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.