Evidence map›Paper›PMID 20848568›Full record

ArticleArthritis and rheumatism2010

Genetically determined Amerindian ancestry correlates with increased frequency of risk alleles for systemic lupus erythematosus.

Elena Sanchez, Ryan D Webb, Astrid Rasmussen, Jennifer A Kelly, Laura Riba, Kenneth M Kaufman, Ignacio Garcia-de la Torre, Jose F Moctezuma, Marco A Maradiaga-Ceceña, Mario H Cardiel-Rios and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in Arthritis and rheumatism, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 3 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 3 syntheses or guidelines pooled it, 84 citations in OpenAlex.

  1. Frontiers in immunology · 2022
    Pooled it
  2. Pooled it
  3. Pooled it
  4. Lupus in Latin America: Where are we now?Clinical rheumatology · 2026
    Article
  5. Article
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  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. BLK and BANK1 polymorphisms and interactions are associated in Mexican patients with systemic lupus erythematosus.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2019
    Article
  14. Article
  15. The potential European genetic predisposition for non-contact anterior cruciate ligament injury.Knee surgery, sports traumatology, arthroscopy : official journal of the ESSKA · 2018
    Article
  16. Genetics and genomics in Peru: Clinical and research perspective.Molecular genetics & genomic medicine · 2018
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 16 institutions in 6 countries.

Elena SanchezOklahoma Medical Research Foundation, Oklahoma City, OK 73104, USA.
Ryan D Webb
Astrid Rasmussen
Jennifer A Kelly
Laura Riba
Kenneth M Kaufman
Ignacio Garcia-de la Torre
Jose F Moctezuma
Marco A Maradiaga-Ceceña
Mario H Cardiel-Rios
Eduardo Acevedo
Mariano Cucho-Venegas
Mercedes A Garcia
Susana Gamron
Bernardo A Pons-Estel
Carlos Vasconcelos
Javier Martin
Teresa Tusié-Luna
John B Harley
Bruce Richardson
Amr H Sawalha
Marta E Alarcón-Riquelme
Oklahoma Medical Research Foundation · USUniversity of Oklahoma Health Sciences Center · USHospital Base Guillermo Almenara Irigoyen · PECentro Científico Tecnólogico - Rosario · ARCincinnati Children's Hospital Medical Center · USConsejo Superior de Investigaciones Científicas · ESHospital de Santo António · PTHospital General de México · MXInstituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán · MXNational University of General San Martín · ARUniversidad Católica de Culiacán · MXUniversidad de Granada · ESUniversidad Nacional Autónoma de México · MXUniversidad Nacional de Córdoba · ARUniversidad San Ignacio de Loyola · PEUniversity of Michigan–Ann Arbor · US

Funding

THE EFFECTS OF ERK PATHWAY INHIBITION ON DNA METHYLATION IN SLEP20RR015577 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI CENTOLA, MICHAEL B · 2000 to 2009
$21.5M
VALIDATING NOVEL GENES IMPLICATED IN LEUKOCYTE CHEMOTAXISP20RR020143 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GAFFNEY, PATRICK M · 2004 to 2011
$21.0M
Program Project in the Genetics of SLEP01AR049084 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KIMBERLY, ROBERT P. · 2002 to 2012
$12.7M
SequencingP01AI083194 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KIMBERLY, ROBERT P. · 2009 to 2013
$9.6M
HLA GENE COMPLEMENTATION IN PRIMARY SJOGREN'S AND LUPUSR01AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI KOTTYAN, LEAH CLAIRE, WEIRAUCH, MATTHEW TYSON · 1987 to 2025
$7.8M
SNP Confirmation and High Throughput Genotyping CoreP30AR053483 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI GUTHRIDGE, JOEL MARVIN · 2007 to 2017
$6.7M
Pre-Clinical Studies to Identify SLE Therapeutic TargetsU19AI082714 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JAMES, JUDITH A · 2009 to 2018
$6.2M
THROMBOCYTOPENIA AND THE GENETICS OF SEVERE LUPUSP50AR048940 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI REICHLIN, MORRIS · 2002 to 2006
$5.8M
GENETIC ASSOCIATION WITH LUPUS IN AMERICAN BLACKSR01AR042460 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 1993 to 2009
$5.1M
Genetic Linkage in LupusR37AI024717 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 2005 to 2014
$4.2M
Science in a Culture of MentoringP30GM103510 · NIGMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI JAMES, JUDITH A · 2012 to 2016
$3.9M
Y RNA SEQUENCES AND RO RNP FUNCTIONR01AI031584 · NIAID · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HARLEY, JOHN BARKER · 1991 to 2006
$2.7M
NCI NIH HHS CA-141700NCI NIH HHS R01 CA141700NCRR NIH HHS P20 RR015577NCRR NIH HHS P20 RR020143NCRR NIH HHS P20-RR-020143NCRR NIH HHS P30 RR031152NCRR NIH HHS RR-020143NIAID NIH HHS AI-024717NIAID NIH HHS AI-083194NIAID NIH HHS P01 AI083194NIAID NIH HHS R01 AI024717NIAID NIH HHS R01 AI031584NIAID NIH HHS R03 AI076729NIAID NIH HHS R03-AI-076729NIAID NIH HHS R37 AI024717NIAID NIH HHS U19 AI082714NIAMS NIH HHS AR-042460NIAMS NIH HHS AR-058621NIAMS NIH HHS AR-062277NIAMS NIH HHS N01 AR062277NIAMS NIH HHS P01 AR049084NIAMS NIH HHS P30 AR053483NIAMS NIH HHS P30-AR-053483NIAMS NIH HHS P50 AR048940NIAMS NIH HHS R01 AR042460NIAMS NIH HHS RC1 AR058621NIDCR NIH HHS R01 DE015223NIGMS NIH HHS P30 GM103510
6 · The paper itself

Abstract

objectiveTo assess whether genetically determined Amerindian ancestry predicts increased presence of risk alleles of known susceptibility genes for systemic lupus erythematosus (SLE).

methodsSingle-nucleotide polymorphisms (SNPs) within 16 confirmed genetic susceptibility loci for SLE were genotyped in a set of 804 Mestizo lupus patients and 667 Mestizo healthy controls. In addition, 347 admixture informative markers were genotyped. Individual ancestry proportions were determined using STRUCTURE. Association analysis was performed using PLINK, and correlation between ancestry and the presence of risk alleles was analyzed using linear regression.

resultsA meta-analysis of the genetic association of the 16 SNPs across populations showed that TNFSF4, STAT4, ITGAM, and IRF5 were associated with lupus in a Hispanic Mestizo cohort enriched for European and Amerindian ancestry. In addition, 2 SNPs within the major histocompatibility complex region, previously shown to be associated in a genome-wide association study in Europeans, were also associated in Mestizos. Using linear regression, we predicted an average increase of 2.34 risk alleles when comparing an SLE patient with 100% Amerindian ancestry versus an SLE patient with 0% Amerindian ancestry (P < 0.0001). SLE patients with 43% more Amerindian ancestry were predicted to carry 1 additional risk allele.

conclusionOur results demonstrate that Amerindian ancestry is associated with an increased number of risk alleles for SLE.

Indexed as

American Indian or Alaska NativeCase-Control StudiesCD11b AntigenGene FrequencyGenetic Predisposition to DiseaseHumansInterferon Regulatory FactorsLatin AmericaLinear ModelsLupus Erythematosus, SystemicOX40 LigandPolymorphism, Single NucleotideRisk FactorsSTAT4 Transcription FactorCD11b AntigenInterferon Regulatory FactorsIRF5 protein, humanITGAM protein, humanOX40 LigandSTAT4 protein, humanSTAT4 Transcription FactorTNFSF4 protein, human

Identifiers

PMID20848568
PMCPMC3078084
OpenAlexW2090297069

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.