ReviewCurrent opinion in microbiology2010
Navigating the future of bacterial molecular epidemiology.
Review in Current opinion in microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed, 61 citations in OpenAlex.
- Genome Sequencing and Comparative Genomic Analysis of Multidrug-ResistantInfection and drug resistance · 2025Article
- Bongkrekic Acid andFoods (Basel, Switzerland) · 2023Review
- Reviving the "Moore Swab": a Classic Environmental Surveillance Tool Involving Filtration of Flowing Surface Water and Sewage Water To Recover TyphoidalApplied and environmental microbiology · 2020Review
- Transforming bacterial disease surveillance and investigation using whole-genome sequence to probe the trace.Frontiers of medicine · 2018Review
- The Promise of Whole Genome Pathogen Sequencing for the Molecular Epidemiology of Emerging Aquaculture Pathogens.Frontiers in microbiology · 2017Review
- Identification of Recombination and Positively Selected Genes in Brucella.Indian journal of microbiology · 2015Article
- Whole-genome sequencing targets drug-resistant bacterial infections.Human genomics · 2015Review
- A large-scale genomic approach affords unprecedented resolution for the molecular epidemiology and evolutionary history of contagious caprine pleuropneumonia.Veterinary research · 2015Article
- Whole-genome sequencing in outbreak analysis.Clinical microbiology reviews · 2015Review
- Construction of a virtual Mycobacterium tuberculosis consensus genome and its application to data from a next generation sequencer.BMC genomics · 2015Article
- Article
- Whole-genome sequencing to control antimicrobial resistance.Trends in genetics : TIG · 2014Review
- Using molecular epidemiology to track Toxoplasma gondii from terrestrial carnivores to marine hosts: implications for public health and conservation.PLoS neglected tropical diseases · 2014Article
- SynTView - an interactive multi-view genome browser for next-generation comparative microorganism genomics.BMC bioinformatics · 2013Article
- Identification of Salmonella enterica serovar Typhi genotypes by use of rapid multiplex ligation-dependent probe amplification.Journal of clinical microbiology · 2013Article
- Modern clinical microbiology: new challenges and solutions.Nature reviews. Microbiology · 2013Review
- Marked host specificity and lack of phylogeographic population structure of Campylobacter jejuni in wild birds.Molecular ecology · 2013Article
- Inferring the source of transmission with phylogenetic data.PLoS computational biology · 2013Article
- Biotyping of multidrug-resistant Klebsiella pneumoniae clinical isolates from France and Algeria using MALDI-TOF MS.PloS one · 2013Article
- Whole genome sequencing versus traditional genotyping for investigation of a Mycobacterium tuberculosis outbreak: a longitudinal molecular epidemiological study.PLoS medicine · 2013Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 3 institutions in 3 countries.
Funding
Abstract
Technological advances in high-throughput genome sequencing have led to an enhanced appreciation of the genetic diversity found within populations of pathogenic bacteria. Methods based on single nucleotide polymorphisms (SNPs) and insertions or deletions (indels) build upon the framework established by multi-locus sequence typing (MLST) and permit a detailed, targeted analysis of variation within related organisms. Robust phylogenetics, when combined with epidemiologically informative data, can be applied to study ongoing temporal and geographical fluctuations in bacterial pathogens. As genome sequencing, SNP detection and geospatial information become more accessible these methods will continue to transform the way molecular epidemiology is used to study populations of bacterial pathogens.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.