Evidence map›Paper›PMID 20846395›Full record

ArticleVirology journal2010

A role for the histone deacetylase HDAC4 in the life-cycle of HIV-1-based vectors.

Johanna A Smith, Jennifer Yeung, Gary D Kao, René Daniel

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Chromatin Regulation and the Histone Code in HIV Latency
.The Yale journal of biology and medicine · 2017
    Review
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Johanna A SmithDivision of Infectious Diseases-Center for Human Virology, Department of Medicine, Thomas Jefferson University, Philadelphia, PA 19107, USA.
Jennifer Yeung
Gary D Kao
René Daniel
Thomas Jefferson University · USSidney Kimmel Cancer Center · USUniversity of Pennsylvania · US

Funding

Cellular co-factors in stable retroviral transductionR01CA125272 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL, RENE · 2007 to 2011
$1.2M
HDAC4 Viability: Unique Mechanisms and FunctionR01CA107956 · NCI · UNIVERSITY OF PENNSYLVANIA · PI KAO, GARY D · 2004 to 2007
$980k
Targeting Retroviral DNA Integration: Role of Host Cell ProteinsR21CA135214 · NCI · THOMAS JEFFERSON UNIVERSITY · PI DANIEL, RENE · 2008 to 2009
$382k
NCI NIH HHS CA107956NCI NIH HHS CA125272NCI NIH HHS CA135214NCI NIH HHS R01 CA125272
6 · The paper itself

Abstract

HIV-1 integration is mediated by the HIV-1 integrase protein, which joins 3'-ends of viral DNA to host cell DNA. To complete the integration process, HIV-1 DNA has to be joined to host cell DNA also at the 5'-ends. This process is called post-integration repair (PIR). Integration and PIR involve a number of cellular co-factors. These proteins exhibit different degrees of involvement in integration and/or PIR. Some are required for efficient integration or PIR. On the other hand, some reduce the efficiency of integration. Finally, some are involved in integration site selection. We have studied the role of the histone deacetylase HDAC4 in these processes. HDAC4 was demonstrated to play a role in both cellular double-strand DNA break repair and transcriptional regulation. We observed that HDAC4 associates with viral DNA in an integrase-dependent manner. Moreover, infection with HIV-1-based vectors induces foci of the HDAC4 protein. The related histone deacetylases, HDAC2 and HDAC6, failed to associate with viral DNA after infection. These data suggest that HDAC4 accumulates at integration sites. Finally, overexpression studies with HDAC4 mutants suggest that HDAC4 may be required for efficient transduction by HIV-1-based vectors in cells that are deficient in other DNA repair proteins. We conclude that HDAC4 is likely involved in PIR.

Indexed as

Host-Pathogen InteractionsVirus IntegrationDNA, ViralGenetic VectorsHeLa CellsHistone Deacetylase 2Histone Deacetylase 6Histone DeacetylasesHIV-1HIV IntegraseHumansProtein BindingRepressor ProteinsTransduction, GeneticDNA, ViralHDAC2 protein, humanHDAC4 protein, humanHDAC6 protein, humanHistone Deacetylase 2Histone Deacetylase 6Histone DeacetylasesHIV Integrasep31 integrase protein, Human immunodeficiency virus 1Repressor Proteins

Identifiers

PMID20846395
PMCPMC2949839
OpenAlexW1993300462

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.