Evidence map›Paper›PMID 20844935›Full record

ArticlePlant molecular biology2010

Ovate family protein 1 as a plant Ku70 interacting protein involving in DNA double-strand break repair.

Yung-Kai Wang, Wen-Chi Chang, Pei-Feng Liu, Mu-Kai Hsiao, Chueh-Tsun Lin, Shih-Ming Lin, Rong-Long Pan

Abstract read
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In one paragraph

Article in Plant molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

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  9. Systematic analysis of thePhysiology and molecular biology of plants : an international journal of functional plant biology · 2020
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  11. Overexpression ofHorticulture research · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yung-Kai WangInstitute of Bioinformatics and Structural Biology, College of Life Science, National Tsing Hua University, Hsin-Chu, 30013, Taiwan, ROC.
Wen-Chi Chang
Pei-Feng Liu
Mu-Kai Hsiao
Chueh-Tsun Lin
Shih-Ming Lin
Rong-Long Pan
National Tsing Hua University · TWNational Cheng Kung University · TWVA San Diego Healthcare System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ku heterodimer, a DNA repair protein complex consisting of 70- and 80-kDa subunits, is involved in the non-homologous end-joining (NHEJ) pathway. Plants are thought to use the NHEJ pathway primarily for the repair of DNA double-strand breaks (DSBs). The Ku70/80 protein has been identified in many plants and been shown to possess several similar functions to its counter protein complex in mammals. In the present study, ovate family protein 1 (AtOFP1) was demonstrated to be a plant Ku-interacting protein by yeast two-hybrid screening and the GST pull-down assay. Truncation analysis revealed that the C-terminal domain of AtKu70 contains interacting sites for AtOFP1. The electrophoretic mobility shift assay (EMSA) indicated that AtOFP1 is also a DNA binding protein with its binding domain at the N-terminus. In 3-week-old seedlings, expression of the AtOFP1 gene increased after exposure to DNA-damaging agents (such as methyl methanesulfonate (MMS) and menadione) in a time dependent manner. Seedlings lacking the AtOFP1 protein were more sensitive to MMS and menadione as compared with wild-type. Furthermore, similar to AtKu70(-/-) and AtKu80(-/-), the AtOFP1(-/-) mutant showed relatively lower NHEJ activity in vivo. Taken together, these results suggest that AtOFP1 may play a role in DNA repair through the NHEJ pathway accompanying with the AtKu protein.

Indexed as

DNA Breaks, Double-StrandedDNA RepairArabidopsisArabidopsis ProteinsDNA-Binding ProteinsMutagensProtein Interaction MappingRepressor ProteinsTwo-Hybrid System TechniquesArabidopsis ProteinsDNA-Binding ProteinsKU70 protein, ArabidopsisMutagensovate family protein 1, ArabidopsisRepressor Proteins

Identifiers

PMID20844935
OpenAlexW2037980148

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.