Evidence map›Paper›PMID 20844286›Full record

ArticleScience translational medicine2010

Disruption at the PTCHD1 Locus on Xp22.11 in Autism spectrum disorder and intellectual disability.

Abdul Noor, Annabel Whibley, Christian R Marshall, Peter J Gianakopoulos, Amelie Piton, Andrew R Carson, Marija Orlic-Milacic, Anath C Lionel, Daisuke Sato, Dalila Pinto and 47 more

Open access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 120 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
120citing papers in PubMed, 1 pooled it
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

120 citing papers in PubMed, 1 synthesis or guideline pooled it, 194 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Article
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  13. Genetic variants inmedRxiv : the preprint server for health sciences · 2023
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  18. Review
  19. Article
  20. Frontiers in psychiatry · 2023
    Article

60 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

57 authors at 15 institutions in 5 countries.

Abdul NoorNeurogenetics Section, Centre for Addiction and Mental Health, Toronto, Ontario, Canada.
Annabel Whibley
Christian R Marshall
Peter J Gianakopoulos
Amelie Piton
Andrew R Carson
Marija Orlic-Milacic
Anath C Lionel
Daisuke Sato
Dalila Pinto
Irene Drmic
Carolyn Noakes
Lili Senman
Xiaoyun Zhang
Rong Mo
Julie Gauthier
Jennifer Crosbie
Alistair T Pagnamenta
Jeffrey Munson
Annette M Estes
Andreas Fiebig
Andre Franke
Stefan Schreiber
Alexandre F R Stewart
Robert Roberts
Ruth McPherson
Stephen J Guter
Edwin H Cook
Geraldine Dawson
Gerard D Schellenberg
Agatino Battaglia
Elena Maestrini
Autism Genome Project Consortium
Linda Jeng
Terry Hutchison
Evica Rajcan-Separovic
Albert E Chudley
Suzanne M E Lewis
Xudong Liu
Jeanette J Holden
Bridget Fernandez
Lonnie Zwaigenbaum
Susan E Bryson
Wendy Roberts
Peter Szatmari
Louise Gallagher
Michael R Stratton
Jozef Gecz
Angela F Brady
Charles E Schwartz
Russell J Schachar
Anthony P Monaco
Guy A Rouleau
Chi-Chung Hui
F Lucy Raymond
Stephen W Scherer
John B Vincent
Centre for Addiction and Mental Health · CAHospital for Sick Children · CAUniversité de Montréal · CAUniversity of Ottawa · CAUniversity of Cambridge · GBAutism Speaks · USCentre for Human Genetics · GBGreenwood Genetic Center · USSouth Australia Pathology · AUUniversity of Alberta · CAUniversity of Bologna · ITUniversity of British Columbia · CAUniversity of Oxford · GBUniversity of Pennsylvania · USUniversity of Toronto · CA

Funding

The Collaborative Genetic Study of Nicotine DependenceP01CA089392 · NCI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2001 to 2012
$17.3M
Neuroimaging in autismU19HD035465 · NICHD · UNIVERSITY OF WASHINGTON · PI DAWSON, GERALDINE · 2002 to 2006
$10.5M
TRANS STUDIES OF COGNITIVE,AFFECTIVE/NEUROCHEMICAL PROCESSES UNDERLYING INSISTENCP50HD055751 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI COOK, EDWIN H · 2007 to 2011
$9.5M
FAMILY STUDY OF COCAINE DEPENDENCER01DA013423 · NIDA · WASHINGTON UNIVERSITY · PI BIERUT, LAURA JEAN · 2000 to 2004
$2.2M
Case Control Candidate Gene Study of AddictionR01DA019963 · NIDA · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2007 to 2009
$1.2M
Study of Addiction: Genetics and EnvironmentU01HG004422 · NHGRI · WASHINGTON UNIVERSITY · PI BIERUT, LAURA J. · 2007 to 2010
$1.2M
Autism Speaks AS2077Autism Speaks AS2173CIHRMedical Research Council G0601030NCI NIH HHS P01 CA089392NHGRI NIH HHS U01 HG004422NICHD NIH HHS HD35465NICHD NIH HHS P50 HD055751NICHD NIH HHS U19 HD035465NIDA NIH HHS R01 DA013423NIDA NIH HHS R01 DA019963Wellcome Trust
6 · The paper itself

Abstract

Autism is a common neurodevelopmental disorder with a complex mode of inheritance. It is one of the most highly heritable of the complex disorders, although the underlying genetic factors remain largely unknown. Here, we report mutations in the X-chromosome PTCHD1 (patched-related) gene in seven families with autism spectrum disorder (ASD) and in three families with intellectual disability. A 167-kilobase microdeletion spanning exon 1 was found in two brothers, one with ASD and the other with a learning disability and ASD features; a 90-kilobase microdeletion spanning the entire gene was found in three males with intellectual disability in a second family. In 900 probands with ASD and 208 male probands with intellectual disability, we identified seven different missense changes (in eight male probands) that were inherited from unaffected mothers and not found in controls. Two of the ASD individuals with missense changes also carried a de novo deletion at another ASD susceptibility locus (DPYD and DPP6), suggesting complex genetic contributions. In additional males with ASD, we identified deletions in the 5' flanking region of PTCHD1 that disrupted a complex noncoding RNA and potential regulatory elements; equivalent changes were not found in male control individuals. Thus, our systematic screen of PTCHD1 and its 5' flanking regions suggests that this locus is involved in ~1% of individuals with ASD and intellectual disability.

Indexed as

AnimalsAutistic DisorderDipeptidyl-Peptidases and Tripeptidyl-PeptidasesFemaleGenes, X-LinkedHumansIn Situ HybridizationIntellectual DisabilityMaleMembrane ProteinsMiceMutationNerve Tissue ProteinsOligonucleotide Array Sequence AnalysisPotassium ChannelsReverse Transcriptase Polymerase Chain ReactionDipeptidyl-Peptidases and Tripeptidyl-PeptidasesDPP6 protein, humanMembrane ProteinsNerve Tissue ProteinsPotassium Channels

Identifiers

PMID20844286
PMCPMC2987731
OpenAlexW2143421478

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.