Evidence map›Paper›PMID 20844015›Full record

ArticleGenes & development2010

ATP is required for interactions between UAP56 and two conserved mRNA export proteins, Aly and CIP29, to assemble the TREX complex.

Kobina Dufu, Michaela J Livingstone, Jan Seebacher, Steven P Gygi, Stuart A Wilson, Robin Reed

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 110 papers.

0numbers the graph read from it
0cells of the map it votes in
110citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

110 citing papers in PubMed, 208 citations in OpenAlex.

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50 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kobina DufuDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Michaela J Livingstone
Jan Seebacher
Steven P Gygi
Stuart A Wilson
Robin Reed
Harvard University · USUniversity of Sheffield · GB

Funding

MECHANISMS OF PREMRNA SPLICING IN HIGHER EUKARYOTESR01GM043375 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI REED, ROBIN E. · 1990 to 2015
$12.6M
Biotechnology and Biological Sciences Research Council BB/E025293/1NIGMS NIH HHS R01 GM043375Wellcome Trust
6 · The paper itself

Abstract

The conserved TREX mRNA export complex is known to contain UAP56, Aly, Tex1, and the THO complex. Here, we carried out proteomic analysis of immunopurified human TREX complex and identified the protein CIP29 as the only new component with a clear yeast relative (known as Tho1). Tho1 is known to function in mRNA export, and we provide evidence that CIP29 likewise functions in this process. Like the known TREX components, a portion of CIP29 localizes in nuclear speckle domains, and its efficient recruitment to mRNA is both splicing- and cap-dependent. We show that UAP56 mediates an ATP-dependent interaction between the THO complex and both CIP29 and Aly, indicating that TREX assembly is ATP-dependent. Using recombinant proteins expressed in Escherichia coli, we show that UAP56, Aly, and CIP29 form an ATP-dependent trimeric complex, and UAP56 bridges the interaction between CIP29 and Aly. We conclude that the interaction of two conserved export proteins, CIP29 and Aly, with UAP56 is strictly regulated by ATP during assembly of the TREX complex.

Indexed as

Adenosine TriphosphateAnimalsCell Cycle ProteinsChlorocebus aethiopsCOS CellsDEAD-box RNA HelicasesExodeoxyribonucleasesHeLa CellsHumansNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA-Binding ProteinsRNA, MessengerRNA Processing, Post-TranscriptionalRNA TransportTranscription FactorsAdenosine TriphosphateALYREF protein, humanCell Cycle ProteinsDDX39B protein, humanDEAD-box RNA HelicasesExodeoxyribonucleasesNuclear ProteinsNucleocytoplasmic Transport ProteinsRNA-Binding ProteinsRNA, MessengerSARNP protein, humanTex1 protein, humanTranscription Factors

Identifiers

PMID20844015
PMCPMC2939366
OpenAlexW2096767063

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.