Evidence map›Paper›PMID 20843814›Full record

ArticleThe Journal of biological chemistry2010

A naturally occurring variant in human TLR9, P99L, is associated with loss of CpG oligonucleotide responsiveness.

Andriy V Kubarenko, Satish Ranjan, Anna Rautanen, Tara C Mills, Sunny Wong, Fredrik Vannberg, Michael Neumaier, Isabelle Bekeredjian-Ding, Adrian V S Hill, Parviz Ahmad-Nejad and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Andriy V KubarenkoDepartment of Toll-like Receptors and Cancer, German Cancer Research Centre (DKFZ), 69120 Heidelberg, Germany.
Satish Ranjan
Anna Rautanen
Tara C Mills
Sunny Wong
Fredrik Vannberg
Michael Neumaier
Isabelle Bekeredjian-Ding
Adrian V S Hill
Parviz Ahmad-Nejad
Alexander N R Weber
Centre for Human Genetics · GBHeidelberg University · DEGerman Cancer Research Center · DEUniversity Medical Centre Mannheim · DE

Funding

Wellcome Trust
6 · The paper itself

Abstract

The innate immune system employs Toll-like receptors (TLRs) for the detection of invading microorganisms based on distinct molecular patterns. For example, TLR9 is activated by microbial DNA and also by short therapeutic CpG-containing oligonucleotides (CpG-ODN). TLR9 activation leads to the production of interferons and the priming of humoral adaptive immune responses. Unfortunately, the principles of ligand recognition by TLR9 are poorly understood, and genetic variants of TLR9, which may affect its function, have not been characterized systematically on the molecular level. We therefore sought to functionally characterize reported single nucleotide polymorphisms of TLR9 in the HEK293 model system. We discovered that two variants, P99L and M400I, are associated with altered receptor function regarding NF-κB activation and cytokine induction. Our investigations show that for the most functionally impaired variant, P99L, the ability to respond to physiological and therapeutic TLR9 ligands is severely compromised. However, CpG-ODN binding is normal. CpG-ODN recognition by TLR9 thus appears to involve two separate events, CpG-ODN binding and sensing. Our studies highlight Pro-99 as a residue important for the latter process. In genotyping studies, we confirmed that both M400I (rs41308230) and P99L (rs5743844) are relatively rare variants of TLR9. Our data add rs41308230 and rs5743844 to the list of functionally important TLR variants and warrant further research into their relevance for infectious disease susceptibility or responsiveness to CpG-ODN-based therapies.

Indexed as

Blotting, WesternCells, CulturedFluorescent Antibody TechniqueGenotypeHumansImmunoprecipitationKidneyLuciferasesMutagenesis, Site-DirectedMutationNF-kappa BOligodeoxyribonucleotidesPolymorphism, Single NucleotideReverse Transcriptase Polymerase Chain ReactionRNA, MessengerToll-Like Receptor 9CPG-oligonucleotideLuciferasesNF-kappa BOligodeoxyribonucleotidesRNA, MessengerTLR9 protein, humanToll-Like Receptor 9

Identifiers

PMID20843814
PMCPMC2978577
OpenAlexW2056254683

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.