Evidence map›Paper›PMID 20838655›Full record

ArticlePLoS biology2010

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis.

Rami A Dalloul, Julie A Long, Aleksey V Zimin, Luqman Aslam, Kathryn Beal, Le Ann Blomberg, Pascal Bouffard, David W Burt, Oswald Crasta, Richard P M A Crooijmans and 61 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 221 papers.

0numbers the graph read from it
0cells of the map it votes in
221citing papers in PubMed
20.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

221 citing papers in PubMed, 428 citations in OpenAlex.

  1. Review
  2. Welfare assessment of turkeys (EFSA journal. European Food Safety Authority · 2026
    Article
  3. Article
  4. MiRNAs in Poultry Health and Production: Progress and Challenges.Animals : an open access journal from MDPI · 2025
    Review
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161 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

71 authors at 20 institutions in 7 countries.

Rami A DalloulAvian Immunobiology Laboratory, Department of Animal and Poultry Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.
Julie A Long
Aleksey V Zimin
Luqman Aslam
Kathryn Beal
Le Ann Blomberg
Pascal Bouffard
David W Burt
Oswald Crasta
Richard P M A Crooijmans
Kristal Cooper
Roger A Coulombe
Supriyo De
Mary E Delany
Jerry B Dodgson
Jennifer J Dong
Clive Evans
Karin M Frederickson
Paul Flicek
Liliana Florea
Otto Folkerts
Martien A M Groenen
Tim T Harkins
Javier Herrero
Steve Hoffmann
Hendrik-Jan Megens
Andrew Jiang
Pieter de Jong
Pete Kaiser
Heebal Kim
Kyu-Won Kim
Sungwon Kim
David Langenberger
Mi-Kyung Lee
Taeheon Lee
Shrinivasrao Mane
Guillaume Marcais
Manja Marz
Audrey P McElroy
Thero Modise
Mikhail Nefedov
Cédric Notredame
Ian R Paton
William S Payne
Geo Pertea
Dennis Prickett
Daniela Puiu
Dan Qioa
Emanuele Raineri
Magali Ruffier
Steven L Salzberg
Michael C Schatz
Chantel Scheuring
Carl J Schmidt
Steven Schroeder
Stephen M J Searle
Edward J Smith
Jacqueline Smith
Tad S Sonstegard
Peter F Stadler
Hakim Tafer
Zhijian Jake Tu
Curtis P Van Tassell
Albert J Vilella
Kelly P Williams
James A Yorke
Liqing Zhang
Hong-Bin Zhang
Xiaojun Zhang
Yang Zhang
Kent M Reed
Virginia Tech · USUniversity of Maryland, College Park · USTexas A&M University · USAgricultural Research Service · USCentre for BioSystems Genomics · NLEuropean Bioinformatics Institute · GBSeoul National University · KRLeipzig University of Applied Sciences · DERoche (United States) · USRoslin Institute · GBAnimal Welfare Institute · USCommittee on Institutional Cooperation · USMichigan United · USOakland University · USThe Pirbright Institute · GBUniversitat Pompeu Fabra · ESUniversity of Vienna · ATVirginia–Maryland College of Veterinary Medicine · USWellcome Sanger Institute · GBNational Institutes of Health · US

Funding

VT Post Baccalaureate Research and Education ProgramR25GM066534 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SMITH, EDWARD J · 2003 to 2024
$7.6M
VT Initiative for Maximizing Student DiversityR25GM072767 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SMITH, EDWARD J · 2007 to 2021
$6.9M
COMPUTATIONAL MODELING OF GENES AND GENE STRUCTURER01LM006845 · NLM · UNIV OF MARYLAND, COLLEGE PARK · PI SALZBERG, STEVEN L. · 1999 to 2010
$5.9M
Reliable Assembler for Whole Genome Shotgun Data.R01HG002945 · NHGRI · UNIV OF MARYLAND, COLLEGE PARK · PI YORKE, JAMES A · 2003 to 2013
$2.1M
Bioinformatics Software for Analyzing Microbial GenomesR01GM083873 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI SALZBERG, STEVEN L. · 2008 to 2017
$2.1M
Genome Analyses of the Incidence of Malignant Histiocytosis in the Flat-Coated ReF33HG006641 · NHGRI · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI SMITH, EDWARD J · 2012 to 2012
$26k
Biotechnology and Biological Sciences Research Council BB/D013704/1Biotechnology and Biological Sciences Research Council BB/D013704/2NHGRI NIH HHS F33 HG006641NHGRI NIH HHS #R01-HG002945NHGRI NIH HHS R01 HG002945NIGMS NIH HHS R01 GM083873NIGMS NIH HHS R25 GM066534NIGMS NIH HHS R25 GM072767NLM NIH HHS #R01-LM006845NLM NIH HHS R01 LM006845Wellcome Trust
6 · The paper itself

Abstract

A synergistic combination of two next-generation sequencing platforms with a detailed comparative BAC physical contig map provided a cost-effective assembly of the genome sequence of the domestic turkey (Meleagris gallopavo). Heterozygosity of the sequenced source genome allowed discovery of more than 600,000 high quality single nucleotide variants. Despite this heterozygosity, the current genome assembly (∼1.1 Gb) includes 917 Mb of sequence assigned to specific turkey chromosomes. Annotation identified nearly 16,000 genes, with 15,093 recognized as protein coding and 611 as non-coding RNA genes. Comparative analysis of the turkey, chicken, and zebra finch genomes, and comparing avian to mammalian species, supports the characteristic stability of avian genomes and identifies genes unique to the avian lineage. Clear differences are seen in number and variety of genes of the avian immune system where expansions and novel genes are less frequent than examples of gene loss. The turkey genome sequence provides resources to further understand the evolution of vertebrate genomes and genetic variation underlying economically important quantitative traits in poultry. This integrated approach may be a model for providing both gene and chromosome level assemblies of other species with agricultural, ecological, and evolutionary interest.

Indexed as

GenomeAnimalsBase SequenceChromosome MappingDNAPolymorphism, Single NucleotideSequence Analysis, DNASequence Homology, Nucleic AcidSpecies SpecificityTurkeysDNA

Identifiers

PMID20838655
PMCPMC2935454
OpenAlexW2158682869

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.