Evidence map›Paper›PMID 20838591›Full record

ArticlePLoS genetics2010

Synthesizing and salvaging NAD: lessons learned from Chlamydomonas reinhardtii.

Huawen Lin, Alan L Kwan, Susan K Dutcher

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 53 citations in OpenAlex.

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  16. Article
  17. NicotinamideInternational journal of tryptophan research : IJTR · 2017
    Review
  18. Comparative Functional Genomic Analysis of TwoFrontiers in microbiology · 2016
    Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Huawen LinDepartment of Genetics, Washington University School of Medicine, St. Louis, Missouri, United States of America.
Alan L Kwan
Susan K Dutcher
Washington University in St. Louis · US

Funding

GENETIC ANALYSIS OF BASAL BODY FUNCTIONR01GM032843 · NIGMS · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 1985 to 2018
$5.9M
DNA PATTERN IDENTIFICATION AND ANALYSISR01HG000249 · NHGRI · WASHINGTON UNIVERSITY · PI STORMO, GARY D · 1990 to 2017
$5.6M
NHGRI NIH HHS HG-00249NHGRI NIH HHS R01 HG000249NIGMS NIH HHS GM-32842NIGMS NIH HHS R01 GM032843
6 · The paper itself

Abstract

The essential coenzyme nicotinamide adenine dinucleotide (NAD+) plays important roles in metabolic reactions and cell regulation in all organisms. Bacteria, fungi, plants, and animals use different pathways to synthesize NAD+. Our molecular and genetic data demonstrate that in the unicellular green alga Chlamydomonas NAD+ is synthesized from aspartate (de novo synthesis), as in plants, or nicotinamide, as in mammals (salvage synthesis). The de novo pathway requires five different enzymes: L-aspartate oxidase (ASO), quinolinate synthetase (QS), quinolate phosphoribosyltransferase (QPT), nicotinate/nicotinamide mononucleotide adenylyltransferase (NMNAT), and NAD+ synthetase (NS). Sequence similarity searches, gene isolation and sequencing of mutant loci indicate that mutations in each enzyme result in a nicotinamide-requiring mutant phenotype in the previously isolated nic mutants. We rescued the mutant phenotype by the introduction of BAC DNA (nic2-1 and nic13-1) or plasmids with cloned genes (nic1-1 and nic15-1) into the mutants. NMNAT, which is also in the de novo pathway, and nicotinamide phosphoribosyltransferase (NAMPT) constitute the nicotinamide-dependent salvage pathway. A mutation in NAMPT (npt1-1) has no obvious growth defect and is not nicotinamide-dependent. However, double mutant strains with the npt1-1 mutation and any of the nic mutations are inviable. When the de novo pathway is inactive, the salvage pathway is essential to Chlamydomonas for the synthesis of NAD+. A homolog of the human SIRT6-like gene, SRT2, is upregulated in the NS mutant, which shows a longer vegetative life span than wild-type cells. Our results suggest that Chlamydomonas is an excellent model system to study NAD+ metabolism and cell longevity.

Indexed as

Amino Acid SequenceAnimalsAspartic AcidBase SequenceBiological EvolutionBiosynthetic PathwaysChlamydomonas reinhardtiiGene Expression RegulationGene Expression Regulation, PlantGenes, PlantMammalsMolecular Sequence DataMutagenesis, InsertionalMutationNADNiacinamide3-acetylpyridineAspartic AcidNADNiacinamideNicotinamide-Nucleotide AdenylyltransferasePlant ProteinsPyridines

Identifiers

PMID20838591
PMCPMC2936527
OpenAlexW2109985607

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.