Evidence map›Paper›PMID 20837710›Full record

ArticleMolecular and cellular biology2010

Differential roles of Sall4 isoforms in embryonic stem cell pluripotency.

Sridhar Rao, Shao Zhen, Sergei Roumiantsev, Lindsay T McDonald, Guo-Cheng Yuan, Stuart H Orkin

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed, 2 pooled it
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 2 syntheses or guidelines pooled it, 180 citations in OpenAlex.

  1. Higher expression of SALL4 predicts poor cancer prognosis: A meta-analysis.Cancer biomarkers : section A of Disease markers · 2017
    Pooled it
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  13. Co-expression of PADI isoforms during progenitor differentiation enables functional diversity.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Sridhar RaoDana Farber Cancer Institute, Department of Pediatric Oncology, Boston, MA, USA.
Shao Zhen
Sergei Roumiantsev
Lindsay T McDonald
Guo-Cheng Yuan
Stuart H Orkin
Dana-Farber Cancer Institute · USChildren's Hospital · TNMassachusetts General Hospital · US

Funding

Exploring the Transcriptional Network regulating ES cell PluripotencyK08HL087951 · NHLBI · VERSITI WISCONSIN, INC. · PI RAO, SRIDHAR · 2007 to 2011
$665k
Howard Hughes Medical InstituteNHLBI NIH HHS 5K08HL87951NHLBI NIH HHS K08 HL087951
6 · The paper itself

Abstract

Murine embryonic stem (ES) cells are defined by continuous self-renewal and pluripotency. A diverse repertoire of protein isoforms arising from alternative splicing is expressed in ES cells without defined biological roles. Sall4, a transcription factor essential for pluripotency, exists as two isoforms (Sall4a and Sall4b). Both isoforms can form homodimers and a heterodimer with each other, and each can interact with Nanog. By genomewide location analysis, we determined that Sall4a and Sall4b have overlapping, but not identical binding sites within the ES cell genome. In addition, Sall4b, but not Sall4a, binds preferentially to highly expressed loci in ES cells. Sall4a and Sall4b binding sites are distinguished by both epigenetic marks at target loci and their clustering with binding sites of other pluripotency factors. When ES cells expressing a single isoform of Sall4 are generated, Sall4b alone could maintain the pluripotent state, although it could not completely suppress all differentiation markers. Sall4a and Sall4b collaborate in maintenance of the pluripotent state but play distinct roles. Our work is novel in establishing such isoform-specific differences in ES cells.

Indexed as

Gene Expression Regulation, DevelopmentalAmino Acid SequenceAnimalsBase SequenceCell DifferentiationCells, CulturedDimerizationDNA-Binding ProteinsEpigenesis, GeneticHomeodomain ProteinsHumansMiceMicroarray AnalysisMolecular Sequence DataNanog Homeobox ProteinPluripotent Stem CellsDNA-Binding ProteinsHomeodomain ProteinsNanog Homeobox ProteinNanog protein, mouseProtein IsoformsSall4 protein, mouseTranscription Factors

Identifiers

PMID20837710
PMCPMC2976381
OpenAlexW2114951390

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.