Evidence map›Paper›PMID 20837600›Full record

ArticleCarcinogenesis2010

Novel mechanism of regulation of the DNA repair enzyme OGG1 in tuberin-deficient cells.

Samy L Habib, Besant K Bhandari, Nahed Sadek, Sherry L Abboud-Werner, Hanna E Abboud

Open access · bronzeAbstract read
In one paragraph

Article in Carcinogenesis, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Effects of HFrontiers in oncology · 2022
    Article
  3. TP63 Is Significantly Upregulated in Diabetic Kidney.International journal of molecular sciences · 2021
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Tuberin inhibits production of the matrix protein fibronectin in diabetes.Journal of the American Society of Nephrology : JASN · 2012
    Article
  13. Review
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Samy L HabibDepartment of Geriatrics, Geriatric Research, Education, and Clinical Center, South Texas Veterans Healthcare System, San Antonio, TX 78229, USA. habib@uthscsa.edu
Besant K Bhandari
Nahed Sadek
Sherry L Abboud-Werner
Hanna E Abboud
The University of Texas Health Science Center at San Antonio · USGeriatric Research Education and Clinical Center · US

Funding

CSF1 GENE EXPRESSION IN OSTEOCLAST BIOLOGYR01AR042306 · NIAMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI ABBOUD-WERNER, SHERRY L · 1994 to 2009
$1.7M
Renal Cell Response in DiabetesR01DK078971 · NIDDK · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI ABBOUD, HANNA E · 2008 to 2012
$1.2M
NIAMS NIH HHS R01 AR042306NIDDK NIH HHS R01 DK078971
6 · The paper itself

Abstract

Tuberin (protein encodes by tuberous sclerosis complex 2, Tsc2) deficiency is associated with the decrease in the DNA repair enzyme 8-oxoG-DNA glycosylase (OGG1) in tumour kidney of tuberous sclerosis complex (TSC) patients. The purpose of this study was to elucidate the mechanisms by which tuberin regulates OGG1. The partial deficiency in tuberin expression that occurs in the renal proximal tubular cells and kidney cortex of the Eker rat is associated with decreased activator protein 4 (AP4) and OGG1 expression. A complete deficiency in tuberin is associated with loss of AP4 and OGG1 expression in kidney tumour from Eker rats and the accumulation of significant levels of 8-oxo-deoxyguanosine. Knockdown of tuberin expression in human renal epithelial cells (HEK293) with small interfering RNA (siRNA) also resulted in a marked decrease in the expression of AP4 and OGG1. In contrast, overexpression of tuberin in HEK293 cells increased the expression of AP4 and OGG1 proteins. Downregulation of AP4 expression using siRNA resulted in a significant decrease in the protein expression of OGG1. Immunoprecipitation studies show that AP4 is associated with tuberin in cells. Gel shift analysis and chromatin immunoprecipitation identified the transcription factor AP4 as a positive regulator of the OGG1 promoter. AP4 DNA-binding activity is significantly reduced in Tsc2(-/-) as compared with Tsc2(+/+) cells. Transcriptional activity of the OGG1 promoter is also decreased in tuberin-null cells compared with wild-type cells. These data indicate a novel role for tuberin in the regulation of OGG1 through the transcription factor AP4. This regulation may be important in the pathogenesis of kidney tumours in patients with TSC disease.

Indexed as

8-Hydroxy-2'-DeoxyguanosineAnimalsBlotting, WesternCell ProliferationCells, CulturedChromatin ImmunoprecipitationDeoxyguanosineDNA-Binding ProteinsDNA GlycosylasesDNA RepairEmbryo, MammalianFibroblastsHumansImmunoenzyme TechniquesKidneyKidney Neoplasms8-Hydroxy-2'-DeoxyguanosineDeoxyguanosineDNA-Binding ProteinsDNA Glycosylasesenhancer-binding protein AP-4Ogg1 protein, mouseRNA, MessengerTranscription FactorsTSC2 protein, humanTsc2 protein, mouseTsc2 protein, ratTuberous Sclerosis Complex 2 ProteinTumor Suppressor Proteins

Identifiers

PMID20837600
PMCPMC3105579
OpenAlexW2105747415

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.