Evidence map›Paper›PMID 20837514›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Deletion of the Cel48S cellulase from Clostridium thermocellum.

Daniel G Olson, Shital A Tripathi, Richard J Giannone, Jonathan Lo, Nicky C Caiazza, David A Hogsett, Robert L Hettich, Adam M Guss, Genia Dubrovsky, Lee R Lynd

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 114 citations in OpenAlex.

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  12. Identifying promoters for gene expression inMetabolic engineering communications · 2015
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Daniel G OlsonMascoma Corporation, Lebanon, NH 03766, USA.
Shital A Tripathi
Richard J Giannone
Jonathan Lo
Nicky C Caiazza
David A Hogsett
Robert L Hettich
Adam M Guss
Genia Dubrovsky
Lee R Lynd
Bioenergy Life Science (United States) · USOak Ridge National Laboratory · USDartmouth College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium thermocellum is a thermophilic anaerobic bacterium that rapidly solubilizes cellulose with the aid of a multienzyme cellulosome complex. Creation of knockout mutants for Cel48S (also known as CelS, S(S), and S8), the most abundant cellulosome subunit, was undertaken to gain insight into its role in enzymatic and microbial cellulose solubilization. Cultures of the Cel48S deletion mutant (S mutant) were able to completely solubilize 10 g/L crystalline cellulose. The cellulose hydrolysis rate of the S mutant strain was 60% lower than the parent strain, with the S mutant strain also exhibiting a 40% reduction in cell yield. The cellulosome produced by the S mutant strain was purified by affinity digestion, characterized enzymatically, and found to have a 35% lower specific activity on Avicel. The composition of the purified cellulosome was analyzed by tandem mass spectrometry with APEX quantification and no significant changes in abundance were observed in any of the major (>1% of cellulosomal protein) enzymatic subunits. Although most cellulolytic bacteria have one family 48 cellulase, C. thermocellum has two, Cel48S and Cel48Y. Cellulose solubilization by a Cel48S and Cel48Y double knockout was essentially the same as that of the Cel48S single knockout. Our results indicate that solubilization of crystalline cellulose by C. thermocellum can proceed to completion without expression of a family 48 cellulase.

Indexed as

Acetivibrio thermocellusBase SequenceCellulaseCelluloseElectrophoresis, Polyacrylamide GelGene Knockout TechniquesHydrolysisMolecular Sequence DataProteomicsSequence Analysis, DNATandem Mass SpectrometryCellulaseCellulose

Identifiers

PMID20837514
PMCPMC2955147
OpenAlexW2001002058

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.