ArticleBMC plant biology2010
Genome-scale identification of soybean BURP domain-containing genes and their expression under stress treatments.
Article in BMC plant biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.
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Who cites it
41 citing papers in PubMed, 80 citations in OpenAlex.
- Delving into the BURP Super family: A Comprehensive QTL-Assisted Study on RD22 genes and its Role in Salinity Stress Tolerance in Chickpea.Biochemical genetics · 2025Article
- Genome-Wide Association Study on Imputed Genotypes of 180 Eurasian SoybeanPlants (Basel, Switzerland) · 2025Article
- Genome-Wide Analysis of BURP Domain-Containing Gene Family inInternational journal of molecular sciences · 2024Article
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- Plant peptides - redefining an area of ribosomally synthesized and post-translationally modified peptides.Natural product reports · 2024Review
- An intramolecular macrocyclase in plant ribosomal peptide biosynthesis.Nature chemical biology · 2024Article
- Transcriptome Profiling of a Soybean Mutant with Salt Tolerance Induced by Gamma-ray Irradiation.Plants (Basel, Switzerland) · 2024Article
- Genome-wide identification and expression analysis of the BURP domain-containing genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response.BMC genomics · 2022Article
- Whole-Genome Identification of APX and CAT Gene Families in Cultivated and Wild Soybeans and Their Regulatory Function in Plant Development and Stress Response.Antioxidants (Basel, Switzerland) · 2022Article
- Genome-wide analysis of BURP genes and identification of a BURP-V gene RcBURP4 in Rosa chinensis.Plant cell reports · 2022Article
- Discovery and biosynthesis of cyclic plant peptides via autocatalytic cyclases.Nature chemical biology · 2022Article
- OverexpressingFrontiers in plant science · 2022Article
- Genome-wide identification of the BURP domain-containing genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Local adaptation contributes to gene expression divergence in maize.G3 (Bethesda, Md.) · 2021Article
- Genome-wide identification and expression analysis of the BURP domain-containing genes in Gossypium hirsutum.BMC genomics · 2019Article
- A quantitative proteomic analysis of the molecular mechanism underlying fertility conversion in thermo-sensitive genetic male sterility line AnnongS-1.BMC plant biology · 2019Article
- Over-expression of GmKR3, a TIR-NBS-LRR type R gene, confers resistance to multiple viruses in soybean.Plant molecular biology · 2019Article
- Assessment of shared alleles in drought-associated candidate genes among southern California white oak species (Quercus sect. Quercus).BMC genetics · 2018Article
- An endoplasmic reticulum-localized Coffea arabica BURP domain-containing protein affects the response of transgenic Arabidopsis plants to diverse abiotic stresses.Plant cell reports · 2017Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundMultiple proteins containing BURP domain have been identified in many different plant species, but not in any other organisms. To date, the molecular function of the BURP domain is still unknown, and no systematic analysis and expression profiling of the gene family in soybean (Glycine max) has been reported.
resultsIn this study, multiple bioinformatics approaches were employed to identify all the members of BURP family genes in soybean. A total of 23 BURP gene types were identified. These genes had diverse structures and were distributed on chromosome 1, 2, 4, 6, 7, 8, 11, 12, 13, 14, and 18. Phylogenetic analysis suggested that these BURP family genes could be classified into 5 subfamilies, and one of which defines a new subfamily, BURPV. Quantitative real-time PCR (qRT-PCR) analysis of transcript levels showed that 15 of the 23 genes had no expression specificity; 7 of them were specifically expressed in some of the tissues; and one of them was not expressed in any of the tissues or organs studied. The results of stress treatments showed that 17 of the 23 identified BURP family genes responded to at least one of the three stress treatments; 6 of them were not influenced by stress treatments even though a stress related cis-element was identified in the promoter region. No stress related cis-elements were found in promoter region of any BURPV member. However, qRT-PCR results indicated that all members from BURPV responded to at least one of the three stress treatments. More significantly, the members from the RD22-like subfamily showed no tissue-specific expression and they all responded to each of the three stress treatments.
conclusionsWe have identified and classified all the BURP domain-containing genes in soybean. Their expression patterns in different tissues and under different stress treatments were detected using qRT-PCR. 15 out of 23 BURP genes in soybean had no tissue-specific expression, while 17 out of them were stress-responsive. The data provided an insight into the evolution of the gene family and suggested that many BURP family genes may be important for plants responding to stress conditions.
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