Evidence map›Paper›PMID 20836087›Full record

ArticleProtein science : a publication of the Protein Society2010

The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu.

Debanu Das, Robert D Finn, Polat Abdubek, Tamara Astakhova, Herbert L Axelrod, Constantina Bakolitsa, Xiaohui Cai, Dennis Carlton, Connie Chen, Hsiu-Ju Chiu and 41 more

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

51 authors at 8 institutions in 2 countries.

Debanu DasJoint Center for Structural Genomics. http://www.jcsg.org
Robert D Finn
Polat Abdubek
Tamara Astakhova
Herbert L Axelrod
Constantina Bakolitsa
Xiaohui Cai
Dennis Carlton
Connie Chen
Hsiu-Ju Chiu
Michelle Chiu
Thomas Clayton
Marc C Deller
Lian Duan
Kyle Ellrott
Carol L Farr
Julie Feuerhelm
Joanna C Grant
Anna Grzechnik
Gye Won Han
Lukasz Jaroszewski
Kevin K Jin
Heath E Klock
Mark W Knuth
Piotr Kozbial
S Sri Krishna
Abhinav Kumar
Winnie W Lam
David Marciano
Mitchell D Miller
Andrew T Morse
Edward Nigoghossian
Amanda Nopakun
Linda Okach
Christina Puckett
Ron Reyes
Henry J Tien
Christine B Trame
Henry van den Bedem
Dana Weekes
Tiffany Wooten
Qingping Xu
Andrew Yeh
Jiadong Zhou
Keith O Hodgson
John Wooley
Marc-André Elsliger
Ashley M Deacon
Adam Godzik
Scott A Lesley
Ian A Wilson
Joint Center for Structural Genomics · USGenomics Institute of the Novartis Research Foundation · USScripps Research Institute · USSLAC National Accelerator Laboratory · USUniversity of California, San Diego · USSanford Burnham Prebys Medical Discovery Institute · USStanford Synchrotron Radiation Lightsource · USWellcome Sanger Institute · GB

Funding

Technology Evaluation CoreU54GM074898 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI STEVENS, RAYMOND C · 2005 to 2009
$50.6M
NIGMS NIH HHS U54 GM074898Wellcome Trust WT077044/Z/05/Z
6 · The paper itself

Abstract

Sufu (Suppressor of Fused), a two-domain protein, plays a critical role in regulating Hedgehog signaling and is conserved from flies to humans. A few bacterial Sufu-like proteins have previously been identified based on sequence similarity to the N-terminal domain of eukaryotic Sufu proteins, but none have been structurally or biochemically characterized and their function in bacteria is unknown. We have determined the crystal structure of a more distantly related Sufu-like homolog, NGO1391 from Neisseria gonorrhoeae, at 1.4 Å resolution, which provides the first biophysical characterization of a bacterial Sufu-like protein. The structure revealed a striking similarity to the N-terminal domain of human Sufu (r.m.s.d. of 2.6 Å over 93% of the NGO1391 protein), despite an extremely low sequence identity of ∼15%. Subsequent sequence analysis revealed that NGO1391 defines a new subset of smaller, Sufu-like proteins that are present in ∼200 bacterial species and has resulted in expansion of the SUFU (PF05076) family in Pfam.

Indexed as

Amino Acid SequenceBacterial ProteinsCrystallographyHumansModels, MolecularMolecular Sequence AnnotationMolecular Sequence DataNeisseria gonorrhoeaeProtein Structure, TertiaryRepressor ProteinsReproducibility of ResultsSequence AlignmentSequence Analysis, ProteinSequence Homology, Amino AcidStatic ElectricityStructural Homology, ProteinBacterial ProteinsRepressor ProteinsSUFU protein, human

Identifiers

PMID20836087
PMCPMC3005784
OpenAlexW1503621447

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.