Evidence map›Paper›PMID 20833802›Full record

ArticleJournal of bacteriology2010

Analysis of the intact surface layer of Caulobacter crescentus by cryo-electron tomography.

Fernando Amat, Luis R Comolli, John F Nomellini, Farshid Moussavi, Kenneth H Downing, John Smit, Mark Horowitz

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. An N4-likeJournal of bacteriology · 2026
    Article
  3. An N4-likebioRxiv : the preprint server for biology · 2025
    Article
  4. Article
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  12. Surface-layer protein from Caulobacter crescentus: expression, purification and X-ray crystallographic analysis.Acta crystallographica. Section F, Structural biology communications · 2016
    Article
  13. Review
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Fernando AmatDepartment of Electrical Engineering, Stanford University, Stanford, CA 94305, USA. famat@stanford.edu
Luis R Comolli
John F Nomellini
Farshid Moussavi
Kenneth H Downing
John Smit
Mark Horowitz
Stanford University · USLawrence Berkeley National Laboratory · USUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The surface layers (S layers) of those bacteria and archaea that elaborate these crystalline structures have been studied for 40 years. However, most structural analysis has been based on electron microscopy of negatively stained S-layer fragments separated from cells, which can introduce staining artifacts and allow rearrangement of structures prone to self-assemble. We present a quantitative analysis of the structure and organization of the S layer on intact growing cells of the Gram-negative bacterium Caulobacter crescentus using cryo-electron tomography (CET) and statistical image processing. Instead of the expected long-range order, we observed different regions with hexagonally organized subunits exhibiting short-range order and a broad distribution of periodicities. Also, areas of stacked double layers were found, and these increased in extent when the S-layer protein (RsaA) expression level was elevated by addition of multiple rsaA copies. Finally, we combined high-resolution amino acid residue-specific Nanogold labeling and subtomogram averaging of CET volumes to improve our understanding of the correlation between the linear protein sequence and the structure at the 2-nm level of resolution that is presently available. The results support the view that the U-shaped RsaA monomer predicted from negative-stain tomography proceeds from the N terminus at one vertex, corresponding to the axis of 3-fold symmetry, to the C terminus at the opposite vertex, which forms the prominent 6-fold symmetry axis. Such information will help future efforts to analyze subunit interactions and guide selection of internal sites for display of heterologous protein segments.

Indexed as

Cryoelectron MicroscopyElectron Microscope TomographyAmino AcidsBacterial ProteinsCaulobacter crescentusImage Processing, Computer-AssistedMembrane GlycoproteinsMetal NanoparticlesStaining and LabelingAmino AcidsBacterial ProteinsMembrane GlycoproteinsS-layer proteins

Identifiers

PMID20833802
PMCPMC2976456
OpenAlexW2103536372

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.