Evidence map›Paper›PMID 20833209›Full record

ArticleMolecular and biochemical parasitology2011

Biochemical characterization of Plasmodium falciparum dipeptidyl aminopeptidase 1.

Flora Wang, Priscilla Krai, Edgar Deu, Brittney Bibb, Conni Lauritzen, John Pedersen, Matthew Bogyo, Michael Klemba

Open access · greenAbstract readComparative Study
In one paragraph

Article in Molecular and biochemical parasitology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Evolutionary Analysis of Dipeptidyl Peptidase I.International journal of molecular sciences · 2022
    Article
  5. Article
  6. Biguanide is a modifiable pharmacophore for recruitment of endogenous ZnBiometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2019
    Review
  7. Article
  8. Article
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  10. Review
  11. Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Flora WangDepartment of Biochemistry, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061, USA.
Priscilla Krai
Edgar Deu
Brittney Bibb
Conni Lauritzen
John Pedersen
Matthew Bogyo
Michael Klemba
Virginia Tech · USStanford University · US

Funding

Small Molecule Imaging of Protease ActivityR01EB005011 · NIBIB · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2005 to 2013
$3.0M
Chemically Mapping Malarial Rupture ProteasesR01AI078947 · NIAID · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2009 to 2013
$2.0M
Chemical characterization of SUMO specific proteases in Plasmodium falciparumR21AI088541 · NIAID · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2010 to 2011
$438k
NIAID NIH HHS R01 AI078947NIAID NIH HHS R21 AI088541NIBIB NIH HHS R01 EB005011
6 · The paper itself

Abstract

Dipeptidyl aminopeptidase 1 (DPAP1) is an essential food vacuole enzyme with a putative role in hemoglobin catabolism by the erythrocytic malaria parasite. Here, the biochemical properties of DPAP1 have been investigated and compared to those of the human ortholog cathepsin C. To facilitate the characterization of DPAP1, we have developed a method for the production of purified recombinant DPAP1 with properties closely resembling those of the native enzyme. Like cathepsin C, DPAP1 is a chloride-activated enzyme that is most efficient in catalyzing amide bond hydrolysis at acidic pH values. The monomeric quaternary structure of DPAP1 differs from the homotetrameric structure of cathepsin C, which suggests that tetramerization is required for a cathepsin C-specific function. The S1 and S2 subsite preferences of DPAP1 and cathepsin C were profiled with a positional scanning synthetic combinatorial library. The S1 preferences bore close similarity to those of other C1-family cysteine peptidases. The S2 subsites of both DPAP1 and cathepsin C accepted aliphatic hydrophobic residues, proline, and some polar residues, yielding a distinct specificity profile. DPAP1 efficiently catalyzed the hydrolysis of several fluorogenic dipeptide substrates; surprisingly, however, a potential substrate with a P2-phenylalanine residue was instead a competitive inhibitor. Together, our biochemical data suggest that DPAP1 accelerates the production of amino acids from hemoglobin by bridging the gap between the endopeptidase and aminopeptidase activities of the food vacuole. Two reversible cathepsin C inhibitors potently inhibited both recombinant and native DPAP1, thereby validating the use of recombinant DPAP1 for future inhibitor discovery and characterization.

Indexed as

Amino AcidsCathepsin CChloridesEnzyme ActivatorsFluorescent DyesHemoglobinsHumansHydrogen-Ion ConcentrationKineticsPlasmodium falciparumProtease InhibitorsProtein MultimerizationProtozoan ProteinsRecombinant ProteinsSubstrate SpecificityAmino AcidsCathepsin CChloridesEnzyme ActivatorsFluorescent DyesHemoglobinsProtease InhibitorsProtozoan ProteinsRecombinant Proteins

Identifiers

PMID20833209
PMCPMC3514014
OpenAlexW1965662075

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.