Evidence map›Paper›PMID 20829372›Full record

ArticleBlood2010

Oncogenic activation of the Notch1 gene by deletion of its promoter in Ikaros-deficient T-ALL.

Robin Jeannet, Jérôme Mastio, Alejandra Macias-Garcia, Attila Oravecz, Todd Ashworth, Anne-Solen Geimer Le Lay, Bernard Jost, Stéphanie Le Gras, Jacques Ghysdael, Thomas Gridley and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 79 citations in OpenAlex.

  1. Trial
  2. Genetic susceptibility ofGlobal medical genetics · 2025
    Article
  3. Article
  4. Expression status transition ofF1000Research · 2025
    Article
  5. Review
  6. Review
  7. IKAROS Family Transcription Factors in Lymphocyte Differentiation and Function.Advances in experimental medicine and biology · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 4 countries.

Robin JeannetInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.
Jérôme Mastio
Alejandra Macias-Garcia
Attila Oravecz
Todd Ashworth
Anne-Solen Geimer Le Lay
Bernard Jost
Stéphanie Le Gras
Jacques Ghysdael
Thomas Gridley
Tasuku Honjo
Freddy Radtke
Jon C Aster
Susan Chan
Philippe Kastner
Institut de génétique et de biologie moléculaire et cellulaire · FRHarvard University · USÉcole Polytechnique Fédérale de Lausanne · CHInstitut Curie · FRJackson Laboratory · USKyoto University · JP

Funding

GENETIC CONTROL OF MESODERM AND NEURAL CREST FORMATIONR01HD034883 · NICHD · MAINEHEALTH · PI GRIDLEY, THOMAS HOOKER · 1998 to 2012
$4.4M
NICHD NIH HHS R01 HD034883
6 · The paper itself

Abstract

The Notch pathway is frequently activated in T-cell acute lymphoblastic leukemias (T-ALLs). Of the Notch receptors, Notch1 is a recurrent target of gain-of-function mutations and Notch3 is expressed in all T-ALLs, but it is currently unclear how these receptors contribute to T-cell transformation in vivo. We investigated the role of Notch1 and Notch3 in T-ALL progression by a genetic approach, in mice bearing a knockdown mutation in the Ikaros gene that spontaneously develop Notch-dependent T-ALL. While deletion of Notch3 has little effect, T cell-specific deletion of floxed Notch1 promoter/exon 1 sequences significantly accelerates leukemogenesis. Notch1-deleted tumors lack surface Notch1 but express γ-secretase-cleaved intracellular Notch1 proteins. In addition, these tumors accumulate high levels of truncated Notch1 transcripts that are caused by aberrant transcription from cryptic initiation sites in the 3' part of the gene. Deletion of the floxed sequences directly reprograms the Notch1 locus to begin transcription from these 3' promoters and is accompanied by an epigenetic reorganization of the Notch1 locus that is consistent with transcriptional activation. Further, spontaneous deletion of 5' Notch1 sequences occurs in approximately 75% of Ikaros-deficient T-ALLs. These results reveal a novel mechanism for the oncogenic activation of the Notch1 gene after deletion of its main promoter.

Indexed as

AnimalsBlotting, NorthernBlotting, WesternCell Transformation, NeoplasticDNA PrimersFlow CytometryGene Expression Regulation, NeoplasticIkaros Transcription FactorImmunoglobulin J Recombination Signal Sequence-Binding ProteinMiceMice, KnockoutMutationPrecursor T-Cell Lymphoblastic Leukemia-LymphomaPromoter Regions, GeneticReceptor, Notch1Receptor, Notch3DNA PrimersIkaros Transcription FactorImmunoglobulin J Recombination Signal Sequence-Binding ProteinNotch1 protein, mouseNotch3 protein, mouseRbpj protein, mouseReceptor, Notch1Receptor, Notch3Receptors, NotchRNA, MessengerZfpn1a1 protein, mouse

Identifiers

PMID20829372
PMCPMC3100247
OpenAlexW1974252477

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.