Evidence map›Paper›PMID 20829065›Full record

ReviewSeminars in immunology2010

Regulation of antigen receptor gene assembly by genetic-epigenetic crosstalk.

Oleg Osipovich, Eugene M Oltz

Open access · greenAbstract readReview
In one paragraph

Review in Seminars in immunology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
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  4. The histone methyltransferase SETDB1 represses endogenous and exogenous retroviruses in B lymphocytes.Proceedings of the National Academy of Sciences of the United States of America · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Oleg OsipovichDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA. oosipovich@path.wustl.edu
Eugene M Oltz
Washington University in St. Louis · US

Funding

Accessibility Control of Antigen Receptor Gene AssemblyR01AI079732 · NIAID · WASHINGTON UNIVERSITY · PI OLTZ, EUGENE M · 2009 to 2013
$1.9M
Long-Range Genetic and Epigenetic Control of Igh Gene AssemblyR21AI082517 · NIAID · WASHINGTON UNIVERSITY · PI OLTZ, EUGENE M · 2009 to 2010
$418k
Long-Range Genetic and Epigenetic Control of Tcrb Gene AssemblyR21AI081224 · NIAID · WASHINGTON UNIVERSITY · PI OLTZ, EUGENE M · 2009 to 2010
$416k
NIAID NIH HHS AI079732NIAID NIH HHS AI081224NIAID NIH HHS AI 82517NIAID NIH HHS R01 AI079732NIAID NIH HHS R21 AI081224NIAID NIH HHS R21 AI082517
6 · The paper itself

Abstract

Many aspects of gene function are coordinated by changes in the epigenome, which include dynamic revisions of chromatin modifications, genome packaging, subnuclear localization, and chromosome conformation. All of these mechanisms are used by developing lymphocytes to regulate the assembly of functional antigen receptor genes by V(D)J recombination. This somatic rearrangement of the genome must be tightly regulated to ensure proper B and T cell development and to avoid chromosomal translocations that cause lymphoid tumors. V(D)J recombination is controlled by a complex interplay between cis-acting regulatory elements that use transcription factors as liaisons to communicate with epigenetic pathways. Genetic-epigenetic crosstalk is a key strategy employed by precursor lymphocytes to modulate chromatin configurations at Ig and Tcr loci and thereby permit or deny access to a single V(D)J recombinase complex. This article describes our current knowledge of how genetic elements orchestrate crosstalk with epigenetic mechanisms to regulate recombinase accessibility via localized, regional, or long-range changes in chromatin.

Indexed as

EpigenomicsGene Rearrangement, T-LymphocyteAnimalsChromatin Assembly and DisassemblyHumansReceptors, Antigen, T-CellReceptors, Antigen, T-Cell

Identifiers

PMID20829065
PMCPMC2981692
OpenAlexW2061894024

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.