Evidence map›Paper›PMID 20826828›Full record

ArticleCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology2010

Missense variants in ATM in 26,101 breast cancer cases and 29,842 controls.

Olivia Fletcher, Nichola Johnson, Isabel dos Santos Silva, Nick Orr, Alan Ashworth, Heli Nevanlinna, Tuomas Heikkinen, Kristiina Aittomäki, Carl Blomqvist, Barbara Burwinkel and 83 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
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  5. FromBreast care (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

93 authors at 1 institution in 3 countries.

Olivia FletcherBritish Breast Cancer Study, The Breakthrough Breast Cancer Research Centre, London, United Kingdom. olivia.fletcher@icr.ac.uk
Nichola Johnson
Isabel dos Santos Silva
Nick Orr
Alan Ashworth
Heli Nevanlinna
Tuomas Heikkinen
Kristiina Aittomäki
Carl Blomqvist
Barbara Burwinkel
Claus R Bartram
Alfons Meindl
Rita K Schmutzler
Angela Cox
Ian Brock
Graeme Elliott
Malcolm W R Reed
Melissa C Southey
Letitia Smith
Amanda B Spurdle
John L Hopper
Fergus J Couch
Janet E Olson
Xianshu Wang
Zachary Fredericksen
Peter Schürmann
Regina Waltes
Michael Bremer
Thilo Dörk
Peter Devilee
Christie J van Asperen
Rob A E M Tollenaar
Caroline Seynaeve
Per Hall
Kamila Czene
Keith Humphreys
Jianjun Liu
Shahana Ahmed
Alison M Dunning
Melanie Maranian
Paul D P Pharoah
Georgia Chenevix-Trench
kConFab Investigators
AOCS Group
Jonathan Beesley
Natalia V Bogdanova
Natalia N Antonenkova
Iosif V Zalutsky
Hoda Anton-Culver
Argyrios Ziogas
Hiltrud Brauch
Yon-Dschun Ko
Ute Hamann
GENICA Consortium
Peter A Fasching
Reiner Strick
Arif B Ekici
Matthias W Beckmann
Graham G Giles
Gianluca Severi
Laura Baglietto
Dallas R English
Roger L Milne
Javier Benítez
José Ignacio Arias
Guillermo Pita
Børge G Nordestgaard
Stig E Bojesen
Henrik Flyger
Daehee Kang
Keun-Young Yoo
Dong Young Noh
Arto Mannermaa
Vesa Kataja
Veli-Matti Kosma
Montserrat García-Closas
Stephen Chanock
Jolanta Lissowska
Louise A Brinton
Jenny Chang-Claude
Shan Wang-Gohrke
Annegien Broeks
Marjanka K Schmidt
Flora E van Leeuwen
Laura J Van't Veer
Sara Margolin
Annika Lindblom
Manjeet K Humphreys
Jonathan Morrison
Radka Platte
Douglas F Easton
Julian Peto
Breast Cancer Association Consortium
Institute of Cancer Research · GB

Funding

Hormone-Related CancersZIACP010126 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI GIERACH, GRETCHEN · 2009 to 2025
$103.5M
The Role of CHFR in Tumorigenesis and Paclitaxel-Sensitivity in Breast CancerP50CA116201 · NCI · MAYO CLINIC ROCHESTER · PI PETER C LUCAS · 2005 to 2026
$49.9M
Northern California Cooperative Family Registry for Breast CancerU01CA069417 · NCI · NORTHERN CALIFORNIA CANCER CENTER · PI JOHN, ESTHER M. · 1995 to 2010
$22.4M
METROPOLITAN NEW YORK REGISTRY OF BREAST CANCER FAMILIESU01CA069398 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI TERRY, MARY BETH · 1995 to 2010
$10.5M
ONTARIO REGISTRY FOR STUDIES OF FAMILIAL BREAST CANCERU01CA069467 · NCI · CANCER CARE ONTARIO · PI ANDRULIS, IRENE L. · 1995 to 2010
$10.4M
Philadelphia Breast Cancer Family RegistryU01CA069631 · NCI · FOX CHASE CANCER CENTER · PI DALY, MARY BERYL · 1995 to 2010
$7.4M
THE AUSTRALIAN BREAST CANCER FAMILY REGISTRYU01CA069638 · NCI · UNIVERSITY OF MELBOURNE · PI HOPPER, JOHN L · 1995 to 2010
$6.6M
A genome-wide association study for breast cancer in BRCA1 mutation carriersR01CA128978 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2008 to 2012
$4.8M
Utah Breast Cancer Family RegistryU01CA069446 · NCI · UNIVERSITY OF UTAH · PI BUYS, SAUNDRA S · 1995 to 2010
$4.6M
HEREDITARY BREAST CANCER--GENETIC AND MOLECULAR STUDIESR01CA058860 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI ANTON-CULVER, HODA A · 1994 to 2008
$3.1M
Genetic epidemiology of cell division regulation in breast cancerR01CA122340 · NCI · MAYO CLINIC ROCHESTER · PI COUCH, FERGUS JOSEPH · 2007 to 2011
$3.0M
HEREDITARY BREAST CANCER--GENETIC AND MOLECULAR STUDIESU01CA058860 · NCI · UNIVERSITY OF CALIFORNIA IRVINE · PI ANTON-CULVER, HODA A. · 1997 to 2002
$2.5M
Breast Cancer Now 2004NOV49Breast Cancer Now BREAST CANCER NOW RESEARCH CENTRECancer Research UK 10118Cancer Research UK 10124Cancer Research UK 11021Cancer Research UK 11022Cancer Research UK A10118Cancer Research UK A10124Cancer Research UK A4343Cancer Research UK A5260Cancer Research UK A5660Cancer Research UK A7497Cancer Research UK C1287/A10118Cancer Research UK C1287/A7497Cancer Research UK C490/A11021Cancer Research UK C8197/A10865NCI NIH HHS CA102740-01A2NCI NIH HHS CA116201NCI NIH HHS CA122340NCI NIH HHS CA128978NCI NIH HHS CA-58860NCI NIH HHS CA69398NCI NIH HHS CA69417NCI NIH HHS CA69446NCI NIH HHS CA69467NCI NIH HHS CA69631NCI NIH HHS CA69638NCI NIH HHS CA-95-011NCI NIH HHS P50 CA116201NCI NIH HHS R01 CA058860NCI NIH HHS R01 CA102740NCI NIH HHS R01 CA122340NCI NIH HHS R01 CA128978NCI NIH HHS U01 CA058860NCI NIH HHS U01 CA069398NCI NIH HHS U01 CA069417NCI NIH HHS U01 CA069446NCI NIH HHS U01 CA069467NCI NIH HHS U01 CA069631NCI NIH HHS U01 CA069638
6 · The paper itself

Abstract

backgroundTruncating mutations in ATM have been shown to increase the risk of breast cancer but the effect of missense variants remains contentious.

methodsWe have genotyped five polymorphic (minor allele frequency, 0.9-2.6%) missense single nucleotide polymorphisms (SNP) in ATM (S49C, S707P, F858L, P1054R, and L1420F) in 26,101 breast cancer cases and 29,842 controls from 23 studies in the Breast Cancer Association Consortium.

resultsCombining the data from all five SNPs, the odds ratio (OR) was 1.05 for being a heterozygote for any of the SNPs and 1.51 for being a rare homozygote for any of the SNPs with an overall trend OR of 1.06 (P(trend) = 0.04). The trend OR among bilateral and familial cases was 1.12 (95% confidence interval, 1.02-1.23; P(trend) = 0.02).

conclusionsIn this large combined analysis, these five missense ATM SNPs were associated with a small increased risk of breast cancer, explaining an estimated 0.03% of the excess familial risk of breast cancer. IMPACT: Testing the combined effects of rare missense variants in known breast cancer genes in large collaborative studies should clarify their overall contribution to breast cancer susceptibility.

Indexed as

Mutation, MissenseAtaxia Telangiectasia Mutated ProteinsBreast NeoplasmsCase-Control StudiesCell Cycle ProteinsDNA-Binding ProteinsDNA Mutational AnalysisFemaleGenetic Predisposition to DiseaseGenotypeHumansPolymorphism, Single NucleotideProtein Serine-Threonine KinasesRisk FactorsTumor Suppressor ProteinsAtaxia Telangiectasia Mutated ProteinsATM protein, humanCell Cycle ProteinsDNA-Binding ProteinsProtein Serine-Threonine KinasesTumor Suppressor Proteins

Identifiers

PMID20826828
PMCPMC2938473
OpenAlexW2150539275

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.