Evidence map›Paper›PMID 20826817›Full record

ArticleThe Journal of biological chemistry2010

Regulation of yeast nutrient permease endocytosis by ATP-binding cassette transporters and a seven-transmembrane protein, RSB1.

Soraya S Johnson, Pamela K Hanson, Raman Manoharlal, Sarah E Brice, L Ashley Cowart, W Scott Moye-Rowley

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

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  16. The yeast sphingolipid signaling landscape.Chemistry and physics of lipids · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Soraya S JohnsonCarver College of Medicine, University of Iowa, Iowa City, Iowa 52242, USA.
Pamela K Hanson
Raman Manoharlal
Sarah E Brice
L Ashley Cowart
W Scott Moye-Rowley
University of Iowa · USMedical University of South Carolina · US

Funding

GENETIC ANALYSIS OF PLEIOTROPIC DRUG RESISTANCER01GM049825 · NIGMS · UNIVERSITY OF IOWA · PI MOYE-ROWLEY, W SCOTT · 1993 to 2019
$6.0M
Regulation of eukaryotic membrane structure and functionR01GM075120 · NIGMS · UNIVERSITY OF IOWA · PI MOYE-ROWLEY, W SCOTT · 2007 to 2010
$1.2M
NIGMS NIH HHS GM49825NIGMS NIH HHS GM75120NIGMS NIH HHS R01 GM049825NIGMS NIH HHS R01 GM075120
6 · The paper itself

Abstract

Ceramide is produced by the condensation of a long chain base with a very long chain fatty acid. In Saccharomyces cerevisiae, one of the two major long chain bases is called phytosphingosine (PHS). PHS has been shown to cause toxicity in tryptophan auxotrophic strains of yeast because this bioactive ceramide precursor causes diversion of the high affinity tryptophan permease Tat2 to the vacuole rather than the plasma membrane. Loss of the integral membrane protein Rsb1 increased PHS sensitivity, which was suggested to be due to this protein acting as an ATP-dependent long chain base efflux protein. More recent experiments demonstrated that loss of the genes encoding the ATP-binding cassette transporter proteins Pdr5 and Yor1 elevated PHS tolerance. This increased resistance was suggested to be due to increased expression of RSB1. Here, we provide an alternative view of PHS resistance influenced by Rsb1 and Pdr5/Yor1. Rsb1 has a seven-transmembrane domain topology more consistent with that of a regulatory protein like a G-protein-coupled receptor rather than a transporter. Importantly, an rsb1Δ cell does not exhibit higher internal levels of PHS compared with isogenic wild-type cells. However, tryptophan transport is increased in pdr5Δ yor1 strains and reduced in rsb1Δ cells. Localization and vacuolar degradation of Tat2 are affected in these genetic backgrounds. Finally, internalization of FM4-64 dye suggests that loss of Pdr5 and Yor1 slows normal endocytic rates. Together, these data argue that Rsb1, Pdr5, and Yor1 regulate the endocytosis of Tat2 and likely other membrane transporter proteins.

Indexed as

EndocytosisAmino Acid Transport SystemsATP-Binding Cassette TransportersBiological TransportBlotting, WesternCell MembraneGreen Fluorescent ProteinsMembrane ProteinsMicroscopy, FluorescenceMutationProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSphingosineTryptophanAmino Acid Transport SystemsATP-Binding Cassette TransportersGreen Fluorescent ProteinsMembrane ProteinsPDR5 protein, S cerevisiaephytosphingosineRSB1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSphingosineTAT2 protein, S cerevisiaeTryptophan

Identifiers

PMID20826817
PMCPMC2975203
OpenAlexW1969221714

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.