ArticleBioinformatics (Oxford, England)2010
Utopia documents: linking scholarly literature with research data.
Article in Bioinformatics (Oxford, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
19 citing papers in PubMed.
- SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data.Wellcome open research · 2016Article
- Data integration in biological research: an overview.Journal of biological research (Thessalonike, Greece) · 2015Review
- rBEFdata: documenting data exchange and analysis for a collaborative data management platform.Ecology and evolution · 2015Article
- Machines first, humans second: on the importance of algorithmic interpretation of open chemistry data.Journal of cheminformatics · 2015Article
- Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery.Drug discovery today · 2014Review
- Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications.Journal of biomedical semantics · 2014Article
- Article
- An analysis of a 'community-driven' reconstruction of the human metabolic network.Metabolomics : Official journal of the Metabolomic Society · 2013Article
- Text-mining solutions for biomedical research: enabling integrative biology.Nature reviews. Genetics · 2012Review
- Open Drug Discovery Teams: A Chemistry Mobile App for Collaboration.Molecular informatics · 2012Article
- Layout-aware text extraction from full-text PDF of scientific articles.Source code for biology and medicine · 2012Article
- Open semantic annotation of scientific publications using DOMEO.Journal of biomedical semantics · 2012Article
- NucleaRDB: information system for nuclear receptors.Nucleic acids research · 2012Article
- BioCreative III interactive task: an overview.BMC bioinformatics · 2011Article
- Integrating GPCR-specific information with full text articles.BMC bioinformatics · 2011Article
- Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case.BMC bioinformatics · 2011Article
- Toward an interactive article: integrating journals and biological databases.BMC bioinformatics · 2011Article
- Article
- GPCRDB: information system for G protein-coupled receptors.Nucleic acids research · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
motivationIn recent years, the gulf between the mass of accumulating-research data and the massive literature describing and analyzing those data has widened. The need for intelligent tools to bridge this gap, to rescue the knowledge being systematically isolated in literature and data silos, is now widely acknowledged.
resultsTo this end, we have developed Utopia Documents, a novel PDF reader that semantically integrates visualization and data-analysis tools with published research articles. In a successful pilot with editors of the Biochemical Journal (BJ), the system has been used to transform static document features into objects that can be linked, annotated, visualized and analyzed interactively (http://www.biochemj.org/bj/424/3/). Utopia Documents is now used routinely by BJ editors to mark up article content prior to publication. Recent additions include integration of various text-mining and biodatabase plugins, demonstrating the system's ability to seamlessly integrate on-line content with PDF articles. AVAILABILITY: http://getutopia.com.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.