Evidence map›Paper›PMID 20823244›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis.

Ryouichi Tanaka, Maxi Rothbart, Seiko Oka, Atsushi Takabayashi, Kaori Takahashi, Masaru Shibata, Fumiyoshi Myouga, Reiko Motohashi, Kazuo Shinozaki, Bernhard Grimm and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 127 citations in OpenAlex.

  1. Article
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  7. Alfalfa transcriptomic responses to the field pathobiome.Plant biology (Stuttgart, Germany) · 2025
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  8. Review
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  14. Article
  15. LHC-like Proteins: The Guardians of Photosynthesis.International journal of molecular sciences · 2023
    Review
  16. Review
  17. Review
  18. Genome-wide association identifies a missing hydrolase for tocopherol synthesis in plants.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Review
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Ryouichi TanakaInstitute of Low Temperature Science, Hokkaido University, Sapporo 060-0819, Japan. rtanaka@lowtem.hokudai.ac.jp
Maxi Rothbart
Seiko Oka
Atsushi Takabayashi
Kaori Takahashi
Masaru Shibata
Fumiyoshi Myouga
Reiko Motohashi
Kazuo Shinozaki
Bernhard Grimm
Ayumi Tanaka
Hokkaido University · JPHumboldt-Universität zu Berlin · DERIKEN Center for Sustainable Resource Science · JPNagaoka National College of Technology · JPShizuoka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The light-harvesting chlorophyll-binding (LHC) proteins are major constituents of eukaryotic photosynthetic machinery. In plants, six different groups of proteins, LHC-like proteins, share a conserved motif with LHC. Although the evolution of LHC and LHC-like proteins is proposed to be a key for the diversification of modern photosynthetic eukaryotes, our knowledge of the evolution and functions of LHC-like proteins is still limited. In this study, we aimed to understand specifically the function of one type of LHC-like proteins, LIL3 proteins, by analyzing Arabidopsis mutants lacking them. The Arabidopsis genome contains two gene copies for LIL3, LIL3:1 and LIL3:2. In the lil3:1/lil3:2 double mutant, the majority of chlorophyll molecules are conjugated with an unsaturated geranylgeraniol side chain. This mutant is also deficient in α-tocopherol. These results indicate that reduction of both the geranylgeraniol side chain of chlorophyll and geranylgeranyl pyrophosphate, which is also an essential intermediate of tocopherol biosynthesis, is compromised in the lil3 mutants. We found that the content of geranylgeranyl reductase responsible for these reactions was severely reduced in the lil3 double mutant, whereas the mRNA level for this enzyme was not significantly changed. We demonstrated an interaction of geranylgeranyl reductase with both LIL3 isoforms by using a split ubiquitin assay, bimolecular fluorescence complementation, and combined blue-native and SDS polyacrylamide gel electrophoresis. We propose that LIL3 is functionally involved in chlorophyll and tocopherol biosynthesis by stabilizing geranylgeranyl reductase.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsBase SequenceChlorophyllChloroplast ProteinsDNA PrimersEnzyme StabilityGenes, PlantLight-Harvesting Protein ComplexesMolecular Sequence DataMutagenesis, InsertionalMutant ProteinsMutationOxidoreductasesPhylogenyArabidopsis ProteinsChlorophyllChloroplast ProteinsDNA Primersgeranylgeranyl reductaselight-harvesting-like protein 3, ArabidopsisLight-Harvesting Protein ComplexesMutant ProteinsOxidoreductasesRNA, MessengerRNA, PlantTocopherols

Identifiers

PMID20823244
PMCPMC2944722
OpenAlexW2022101328

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.