Evidence map›Paper›PMID 20823222›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Identification of a gene essential for protoporphyrinogen IX oxidase activity in the cyanobacterium Synechocystis sp. PCC6803.

Kazushige Kato, Ryouichi Tanaka, Shinsuke Sano, Ayumi Tanaka, Hideo Hosaka

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Review
  2. Article
  3. Epigenetic control of tetrapyrrole biosynthesis by m4C DNA methylation in a cyanobacterium.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
    Article
  4. Article
  5. Photosynthesis, Water Status and KPlants (Basel, Switzerland) · 2023
    Article
  6. Microbial Synthesis of HemeMolecules (Basel, Switzerland) · 2023
    Review
  7. Article
  8. Review
  9. Biosynthesis of the modified tetrapyrroles-the pigments of life.The Journal of biological chemistry · 2020
    Review
  10. Frontiers in microbiology · 2020
    Article
  11. Article
  12. Making and breaking heme.Current opinion in structural biology · 2019
    Review
  13. Design and Synthesis ofMolecules (Basel, Switzerland) · 2019
    Article
  14. Article
  15. The cyanobacterial protoporphyrinogen oxidase HemJ is a newThe Journal of biological chemistry · 2018
    Article
  16. WhollymBio · 2017
    Article
  17. Prokaryotic Heme Biosynthesis: Multiple Pathways to a Common Essential Product.Microbiology and molecular biology reviews : MMBR · 2017
    Review
  18. The Complex Transcriptional Response ofG3 (Bethesda, Md.) · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Kazushige KatoOdawara Research Center, Nippon Soda Co., Ltd., Odawara 250-0280, Japan. k.katou@nippon-soda.co.jp
Ryouichi Tanaka
Shinsuke Sano
Ayumi Tanaka
Hideo Hosaka

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protoporphyrinogen oxidase (Protox) catalyses the oxidation of protoporphyrinogen IX to protoporphyrin IX during the synthesis of tetrapyrrole molecules. Protox is encoded by the hemY gene in eukaryotes and by the hemG gene in many γ-proteobacteria, including Escherichia coli. It has been suggested that other bacteria possess a yet unidentified type of Protox. To identify a unique bacterial gene encoding Protox, we first introduced the Arabidopsis hemY gene into the genome of the cyanobacterium, Synechocystis sp. PCC6803. We subsequently mutagenized the cells by transposon tagging and screened the tagged lines for mutants that were sensitive to acifluorfen, which is a specific inhibitor of the hemY-type Protox. Several cell lines containing the tagged slr1790 locus exhibited acifluorfen sensitivity. The slr1790 gene encodes a putative membrane-spanning protein that is distantly related to the M subunit of NADH dehydrogenase complex I. We attempted to disrupt this gene in the wild-type background of Synechocystis, but we were only able to obtain heteroplasmic disruptants. These cells accumulated a substantial amount of protoporphyrin IX, suggesting that the slr1790 gene is essential for growth and Protox activity of cells. We found that most cyanobacteria and many other bacteria possess slr1790 homologs. We overexpressed an slr1790 homolog of Rhodobacter sphaeroides in Escherichia coli and found that this recombinant protein possesses Protox activity in vitro. These results collectively demonstrate that slr1790 encodes a unique Protox enzyme and we propose naming the slr1790 gene "hemJ."

Indexed as

Genes, BacterialArabidopsisBacterial ProteinsBase SequenceDNA, BacterialDNA PrimersEnzyme InhibitorsGenes, PlantGene TargetingMutagenesis, InsertionalNitrobenzoatesPhylogenyProtoporphyrinogen OxidaseRecombinant ProteinsRhodobacter sphaeroidesSynechocystisacifluorfenBacterial ProteinsDNA, BacterialDNA PrimersEnzyme InhibitorsNitrobenzoatesProtoporphyrinogen OxidaseRecombinant Proteins

Identifiers

PMID20823222
PMCPMC2944763

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.