Evidence map›Paper›PMID 20818390›Full record

ArticleNature structural & molecular biology2010

A metazoan ortholog of SpoT hydrolyzes ppGpp and functions in starvation responses.

Dawei Sun, Gina Lee, Jun Hee Lee, Hye-Yeon Kim, Hyun-Woo Rhee, Seung-Yeol Park, Kyung-Jin Kim, Yongsung Kim, Bo Yeon Kim, Jong-In Hong and 5 more

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Nature structural & molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed.

  1. Article
  2. Article
  3. Identification of 4,5,6,7-Tetrabromo-1bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Genome-wide changes of protein translation levels for cell and organelle proliferation in a simple unicellular alga.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. International journal of molecular sciences · 2023
    Article
  17. Article
  18. Bacterial Pathogen Infection Triggers Magic Spot Nucleotide Signaling inJournal of the American Chemical Society · 2023
    Article
  19. Review
  20. Identification of a broadly conserved family of enzymes that hydrolyze (p)ppApp.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Dawei SunDivision of Magnetic Resonance, Korea Basic Science Institute, Chungbuk, South Korea.
Gina Lee
Jun Hee Lee
Hye-Yeon Kim
Hyun-Woo Rhee
Seung-Yeol Park
Kyung-Jin Kim
Yongsung Kim
Bo Yeon Kim
Jong-In Hong
Chankyu Park
Hyon E Choy
Jung Hoe Kim
Young Ho Jeon
Jongkyeong Chung

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In nutrient-starved bacteria, RelA and SpoT proteins have key roles in reducing cell growth and overcoming stresses. Here we identify functional SpoT orthologs in metazoa (named Mesh1, encoded by HDDC3 in human and Q9VAM9 in Drosophila melanogaster) and reveal their structures and functions. Like the bacterial enzyme, Mesh1 proteins contain an active site for ppGpp hydrolysis and a conserved His-Asp-box motif for Mn(2+) binding. Consistent with these structural data, Mesh1 efficiently catalyzes hydrolysis of guanosine 3',5'-diphosphate (ppGpp) both in vitro and in vivo. Mesh1 also suppresses SpoT-deficient lethality and RelA-induced delayed cell growth in bacteria. Notably, deletion of Mesh1 (Q9VAM9) in Drosophila induces retarded body growth and impaired starvation resistance. Microarray analyses reveal that the amino acid-starved Mesh1 null mutant has highly downregulated DNA and protein synthesis-related genes and upregulated stress-responsible genes. These data suggest that metazoan SpoT orthologs have an evolutionarily conserved function in starvation responses.

Indexed as

Amino Acid MotifsAmino AcidsAmino Acid SequenceAnimalsBinding SitesCatalytic DomainConserved SequenceDrosophila melanogasterDrosophila ProteinsGene DeletionGene Expression RegulationGenetic Complementation TestGuanosine TetraphosphateHeat-Shock ProteinsHumansHydrolysisAmino AcidsDrosophila Proteinsguanosine-3',5'-bis(diphosphate) 3'-pyrophosphataseguanosine 3',5'-polyphosphate synthetasesGuanosine TetraphosphateHDDC3 protein, humanHeat-Shock ProteinsLigasesManganesePyrophosphatases

Identifiers

PMID20818390

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.