Evidence map›Paper›PMID 20818159›Full record

ArticleCell cycle (Georgetown, Tex.)2010

Disparate chromatin landscapes and kinetics of inactivation impact differential regulation of p53 target genes.

Nathan P Gomes, Joaquín M Espinosa

Open access · bronzeAbstract read
In one paragraph

Article in Cell cycle (Georgetown, Tex.), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 23 citations in OpenAlex.

  1. Review
  2. Article
  3. ThePeerJ · 2020
    Article
  4. Ceramide Signaling and p53 Pathways.Advances in cancer research · 2018
    Review
  5. Mechanisms of transcriptional regulation by p53.Cell death and differentiation · 2018
    Review
  6. Review
  7. Article
  8. Distinct phosphatases antagonize the p53 response in different phases of the cell cycle.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  9. Dual effect of CTCF loss on neuroprogenitor differentiation and survival.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2014
    Article
  10. Article
  11. Article
  12. The p53 circuit board.Biochimica et biophysica acta · 2012
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Nathan P GomesHoward Hughes Medical Institute, Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO, USA.
Joaquín M Espinosa
Howard Hughes Medical Institute · USUniversity of Colorado Boulder · US

Funding

MOLECULAR BIOLOGYT32GM007135 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI KRAUTER, KENNETH S · 1985 to 2012
$5.7M
Stress- and Promoter-Specific Mechanisms of Transcritpional Activation by p53R01CA117907 · NCI · UNIVERSITY OF COLORADO DENVER · PI ESPINOSA, JOAQUIN M. · 2006 to 2022
$4.4M
Howard Hughes Medical InstituteNCI NIH HHS R01 CA117907NCI NIH HHS R01-CA117907NIGMS NIH HHS T32 GM007135NIGMS NIH HHS T32GM07135
6 · The paper itself

Abstract

The p53 transcription factor regulates the expression of genes involved in cellular responses to stress, including cell cycle arrest and apoptosis. The p53 transcriptional program is extremely malleable, with target gene expression varying in a stress- and cell type-specific fashion. The molecular mechanisms underlying differential p53 target gene expression remain elusive. Here we provide evidence for gene-specific mechanisms affecting expression of three important p53 target genes. First we show that transcription of the apoptotic gene PUMA is regulated through intragenic chromatin boundaries, as revealed by distinct histone modification territories that correlate with binding of the insulator factors CTCF, Cohesins and USF1/2. Interestingly, this mode of regulation produces an evolutionary conserved long non-coding RNA of unknown function. Second, we demonstrate that the kinetics of transcriptional competence of the cell cycle arrest gene p21 and the apoptotic gene FAS are markedly different in vivo, as predicted by recent biochemical dissection of their core promoter elements in vitro. After a pulse of p53 activity in cells, assembly of the transcriptional apparatus on p21 is rapidly reversed, while FAS transcriptional activation is more sustained. Collectively these data add to a growing list of p53-autonomous mechanisms that impact differential regulation of p53 target genes.

Indexed as

Gene Expression RegulationApoptosis Regulatory ProteinsCCCTC-Binding FactorCell Cycle ProteinsCell Line, TumorChromatinChromatin ImmunoprecipitationChromosomal Proteins, Non-HistoneCohesinsCyclin-Dependent Kinase Inhibitor p21fas ReceptorHistonesHumansKineticsProtein Structure, TertiaryProto-Oncogene ProteinsApoptosis Regulatory ProteinsBBC3 protein, humanCCCTC-Binding FactorCell Cycle ProteinsChromatinChromosomal Proteins, Non-HistoneCohesinsCTCF protein, humanCyclin-Dependent Kinase Inhibitor p21FAS protein, humanfas ReceptorHistonesProto-Oncogene ProteinsRepressor ProteinsRNA, UntranslatedTumor Suppressor Protein p53

Identifiers

PMID20818159
PMCPMC3047614
OpenAlexW2090408677

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.