ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2010
Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.
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51 citing papers in PubMed, 105 citations in OpenAlex.
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- Primary multistep phosphorelay activation comprises both cytokinin and abiotic stress responses: insights from comparative analysis of Brassica type-A response regulators.Journal of experimental botany · 2024Article
- Genome-wide identification and expression analysis of two-component system genes in switchgrass (Panicum virgatum L.).BMC plant biology · 2024Article
- ASRpro: A machine-learning computational model for identifying proteins associated with multiple abiotic stress in plants.The plant genome · 2024Article
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- Two-Component System Genes inInternational journal of molecular sciences · 2023Article
- Characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023Article
- Trends in the two-component system's role in the synthesis of antibiotics by Streptomyces.Applied microbiology and biotechnology · 2023Review
- Genome-wide identification and expression profiling of two-component system (TCS) genes inFrontiers in genetics · 2023Article
- Omics-assisted characterization of two-component system genes fromFrontiers in plant science · 2023Article
- Systematic analysis of Histidine photosphoto transfer gene family in cotton and functional characterization in response to salt and around tolerance.BMC plant biology · 2022Article
- Structure and character analysis of cotton response regulator genes family reveals that GhRR7 responses to draught stress.Biological research · 2022Article
- Genome-wide identification and expression analysis of two-component system genes in sweet potato (Frontiers in plant science · 2022Article
- Genome-wide identification and expression analysis of theFrontiers in plant science · 2022Article
- Transcriptomic analyses of cacao flavonoids produced in photobioreactors.BMC genomics · 2021Article
- Ectopic expression of GmHP08 enhances resistance of transgenic Arabidopsis toward drought stress.Plant cell reports · 2021Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
In plants, the two-component systems (TCSs) play important roles in regulating diverse biological processes, including responses to environmental stress stimuli. Within the soybean genome, the TCSs consist of at least 21 histidine kinases, 13 authentic and pseudo-phosphotransfers and 18 type-A, 15 type-B, 3 type-C and 11 pseudo-response regulator proteins. Structural and phylogenetic analyses of soybean TCS members with their Arabidopsis and rice counterparts revealed similar architecture of their TCSs. We identified a large number of closely homologous soybean TCS genes, which likely resulted from genome duplication. Additionally, we analysed tissue-specific expression profiles of those TCS genes, whose data are available from public resources. To predict the putative regulatory functions of soybean TCS members, with special emphasis on stress-responsive functions, we performed comparative analyses from all the TCS members of soybean, Arabidopsis and rice and coupled these data with annotations of known abiotic stress-responsive cis-elements in the promoter region of each soybean TCS gene. Our study provides insights into the architecture and a solid foundation for further functional characterization of soybean TCS elements. In addition, we provide a new resource for studying the conservation and divergence among the TCSs within plant species and/or between plants and other organisms.
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