Evidence map›Paper›PMID 20815724›Full record

ArticleThe Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association2011

CRISPLD2 variants including a C471T silent mutation may contribute to nonsyndromic cleft lip with or without cleft palate.

Ariadne Letra, Renato Menezes, Margaret E Cooper, Renata F Fonseca, Stephen Tropp, Manika Govil, Jose M Granjeiro, Sandra R Imoehl, M Adela Mansilla, Jeffrey C Murray and 8 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Disruption ofFrontiers in cell and developmental biology · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The evolution of human genetic studies of cleft lip and cleft palate.Annual review of genomics and human genetics · 2012
    Review
  12. Nonsyndromic cleft lip and palate: CRISPLD genes and the folate gene pathway connection.Birth defects research. Part A, Clinical and molecular teratology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 3 countries.

Ariadne Letra
Renato Menezes
Margaret E Cooper
Renata F Fonseca
Stephen Tropp
Manika Govil
Jose M Granjeiro
Sandra R Imoehl
M Adela Mansilla
Jeffrey C Murray
Eduardo E Castilla
Iêda M Orioli
Andrew E Czeizel
Lian Ma
Brett T Chiquet
Jacqueline T Hecht
Alexandre R Vieira
Mary L Marazita
University of Pittsburgh · USUniversity of Iowa · USFundação Oswaldo Cruz · BRNational Center for Epidemiology · HUUniversidade Federal do Rio de Janeiro · BR

Funding

Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
PHENOTYPE AND GENETICS IN OROFACIAL CLEFT FAMILIESP50DE016215 · NIDCR · UNIVERSITY OF IOWA · PI LOVETT, MICHAEL · 2004 to 2008
$10.1M
MOLECULAR STUDIES IN NONSYNDROMIC CLEFT LIP AND PALATER01DE011931 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BLANTON, SUSAN HALLORAN, HECHT, JACQUELINE T · 1999 to 2017
$7.6M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
WATER PRECAUTIONS AND TYMPANOSTOMY TUBESM01RR000084 · NCRR · CHILDREN'S HOSP PITTSBURGH/UPMC HLTH SYS · PI PERLMUTTER, DAVID H · 1985 to 2006
$5.6M
GENETIC MAPPING STUDIES OF ORAL-FACIAL CLEFTS IN CHINAR01DE009886 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MARAZITA, MARY L · 1992 to 2002
$1.0M
Clefts/Craniofacial Anomalies and Cancer SusceptibilityR00DE018413 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SILVA, RENATO MENEZES · 2010 to 2012
$722k
Statistical Genetic Analysis of Complex Craniofacial and Dental Genetic DisordersR00DE018085 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GOVIL, MANIKA · 2011 to 2013
$709k
Matrix Metalloproteinase Gene Variants and Cleft Lip and PalateR00DE018954 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LETRA, ARIADNE M · 2010 to 2012
$658k
Dental anomalies as an extended phenotype for cleftsR21DE016718 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VIEIRA, ALEXANDRE REZENDE · 2005 to 2006
$402k
Statistical Genetic Analysis of Complex Craniofacial and Dental Genetic DisordersK99DE018085 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GOVIL, MANIKA · 2009 to 2010
$308k
Planning International Orofacial Cleft Genetic StudiesR21DE016930 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L · 2006 to 2007
$293k
NCRR NIH HHS M01 RR000084NIDCR NIH HHS K99 DE018085NIDCR NIH HHS K99-DE018085NIDCR NIH HHS K99 DE018413NIDCR NIH HHS K99-DE018913NIDCR NIH HHS K99 DE018954NIDCR NIH HHS K99-DE018954NIDCR NIH HHS P50 DE016215NIDCR NIH HHS P50-DE016215NIDCR NIH HHS R00 DE018085NIDCR NIH HHS R00 DE018413NIDCR NIH HHS R00 DE018954NIDCR NIH HHS R01 DE009886NIDCR NIH HHS R01 DE011931NIDCR NIH HHS R01 DE012472NIDCR NIH HHS R01-DE012472NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R01-DE016148NIDCR NIH HHS R01-DE016148-04A1NIDCR NIH HHS R01-DE09886NIDCR NIH HHS R21 DE016718NIDCR NIH HHS R21-DE016718NIDCR NIH HHS R21 DE016930NIDCR NIH HHS R21-DE016930NIDCR NIH HHS R37-DE008559
6 · The paper itself

Abstract

objectiveTo assess the association between nonsyndromic (NS) cleft lip with or without cleft palate (CL(P)) and single-nucleotide polymorphisms (SNPs) within the CRISPLD2 gene (cysteine-rich secretory protein LCCL domain containing 2).

designFour SNPs within the CRISPLD2 gene domain (rs1546124, rs8061351, rs2326398, rs4783099) were genotyped to test for association via family-based association methods.

participantsA total of 5826 individuals from 1331 families in which one or more family member is affected with CL(P).

resultsEvidence of association was seen for SNP rs1546124 in U.S. (p  =  .02) and Brazilian (p  =  .04) Caucasian cohorts. We also found association of SNP rs1546124 with cleft palate alone (CP) in South Americans (Guatemala and ECLAMC) and combined Hispanics (Guatemala, ECLAMC, and Texas Hispanics; p  =  .03 for both comparisons) and with both cleft lip with cleft palate (CLP; p  =  .04) and CL(P) (p  =  .02) in North Americans. Strong evidence of association was found for SNP rs2326398 with CP in Asian populations (p  =  .003) and with CL(P) in Hispanics (p  =  .03) and also with bilateral CL(P) in Brazilians (p  =  .004). In Brazilians, SNP rs8061351 showed association with cleft subgroups incomplete CL(P) (p  =  .004) and unilateral incomplete CL(P) (p  =  .003). Prediction of SNP functionality revealed that the C allele in the C471T silent mutation (overrepresented in cases with CL(P) presents two putative exonic splicing enhancer motifs and creates a binding site AP-2 alpha, a transcription factor involved in craniofacial development.

conclusionsOur results support the hypothesis that variants in the CRISPLD2 gene may be involved in the etiology of NS CL(P).

Indexed as

CytosineThymineAdenineAlternative SplicingAsian PeopleCase-Control StudiesCell Adhesion MoleculesCleft LipCleft PalateCohort StudiesEnhancer Elements, GeneticExonsGene FrequencyGenetic VariationGenotypeGuanineAdenineCell Adhesion MoleculesCRISPLD2 protein, humanCytosineGuanineInterferon Regulatory FactorsSp1 Transcription FactorThymineTranscription Factor AP-2

Identifiers

PMID20815724
PMCPMC3000893
OpenAlexW2060471302

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.