Evidence map›Paper›PMID 20813760›Full record

ArticleNucleic acids research2011

An insulator embedded in the chicken α-globin locus regulates chromatin domain configuration and differential gene expression.

Mayra Furlan-Magaril, Eria Rebollar, Georgina Guerrero, Almudena Fernández, Eduardo Moltó, Edgar González-Buendía, Marta Cantero, Lluís Montoliu, Félix Recillas-Targa

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
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  4. Hypertrophic chondrocyte-specificAmerican journal of translational research · 2019
    Article
  5. Developing in 3D: the role of CTCF in cell differentiation.Development (Cambridge, England) · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Mayra Furlan-MagarilInstituto de Fisiología Celular, Departamento de Genética Molecular, Universidad Nacional Autónoma de México, México D.F., México.
Eria Rebollar
Georgina Guerrero
Almudena Fernández
Eduardo Moltó
Edgar González-Buendía
Marta Cantero
Lluís Montoliu
Félix Recillas-Targa
Universidad Nacional Autónoma de México · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome organization into transcriptionally active domains denotes one of the first levels of gene expression regulation. Although the chromatin domain concept is generally accepted, only little is known on how domain organization impacts the regulation of differential gene expression. Insulators might hold answers to address this issue as they delimit and organize chromatin domains. We have previously identified a CTCF-dependent insulator with enhancer-blocking activity embedded in the 5' non-coding region of the chicken α-globin domain. Here, we demonstrate that this element, called the αEHS-1.4 insulator, protects a transgene against chromosomal position effects in stably transfected cell lines and transgenic mice. We found that this insulator can create a regulated chromatin environment that coincides with the onset of adult α-globin gene expression. Furthermore, such activity is in part dependent on the in vivo regulated occupancy of CTCF at the αEHS-1.4 element. Insulator function is also regulated by CTCF poly(ADP-ribosyl)ation. Our results suggest that the αEHS-1.4 insulator contributes in organizing the chromatin structure of the α-globin gene domain and prevents activation of adult α-globin gene expression at the erythroblast stage via CTCF.

Indexed as

Gene Expression RegulationInsulator Elementsalpha-GlobinsAnimalsBinding SitesCCCTC-Binding FactorCell DifferentiationCell LineChickensChromatinChromosomal Position EffectsErythroid CellsGenetic LociLocus Control RegionMiceMice, Transgenicalpha-GlobinsCCCTC-Binding FactorChromatinCtcf protein, mousePoly(ADP-ribose) Polymerase InhibitorsRepressor Proteins

Identifiers

PMID20813760
PMCPMC3017597
OpenAlexW2054470550

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.