Evidence map›Paper›PMID 20810803›Full record

ArticleThe American journal of tropical medicine and hygiene2010

Enhanced determination of Streptococcus pneumoniae serotypes associated with invasive disease in Laos by using a real-time polymerase chain reaction serotyping assay with cerebrospinal fluid.

Catrin E Moore, Amphone Sengduangphachanh, Thaksinaporn Thaojaikong, Joy Sirisouk, Dona Foster, Rattanaphone Phetsouvanh, Lesley McGee, Derrick W Crook, Paul N Newton, Sharon J Peacock

Abstract read
In one paragraph

Article in The American journal of tropical medicine and hygiene, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  3. Observational
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  12. The use of dried cerebrospinal fluid filter paper spots as a substrate for PCR diagnosis of the aetiology of bacterial meningitis in the Lao PDR.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2013
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  13. Article
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  15. Fool's gold: Why imperfect reference tests are undermining the evaluation of novel diagnostics: a reevaluation of 5 diagnostic tests for leptospirosis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2012
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  18. Review
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  20. Response to Moore and others (2010) and Mehta (2010).The American journal of tropical medicine and hygiene · 2011
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Catrin E MooreWellcome Trust-Mahosot Hospital-Oxford Tropical Medicine Research Collaboration, Mahosot Hospital, Vientiane, Laos. catrin@tropmedres.ac
Amphone Sengduangphachanh
Thaksinaporn Thaojaikong
Joy Sirisouk
Dona Foster
Rattanaphone Phetsouvanh
Lesley McGee
Derrick W Crook
Paul N Newton
Sharon J Peacock

Funding

Wellcome Trust
6 · The paper itself

Abstract

A prospective hospital-based study was undertaken to define the incidence of invasive pneumococcal disease (IPD) and circulating serotypes in Laos. Of 10,799 patients with hemocultures and 353 patients with cerebrospinal fluid samples, 0.21% and 5.4%, respectively, were positive for Streptococcus pneumoniae, giving a total of 35 IPD patients. We developed a real-time polymerase chain reaction to detect serotypes represented in the 13-valent pneumococcal vaccine. A blinded evaluation comparing serotype as defined by the Quellung reaction versus the polymerase chain reaction demonstrated 100% concordance. The most frequent serotype (n = 33 patients) was 1 (n = 6), followed by serotypes 5, 6A/B/C, 14, and 23F. Serotypes represented in the 7-valent polysaccharide-protein conjugate vaccine (PCV-7) infected 39% of patients, with 73% coverage for the PCV-10 and PCV-13 vaccines. Although the sample size is small, these data suggest that the PCV-7 vaccine may have relatively low efficacy in Laos. Further studies are urgently needed to guide pneumococcal vaccine policy in Laos.

Indexed as

Anti-Bacterial AgentsBase SequenceDNA PrimersHumansLaosMicrobial Sensitivity TestsPneumococcal VaccinesPolymerase Chain ReactionProspective StudiesSensitivity and SpecificityStreptococcal InfectionsStreptococcus pneumoniaeAnti-Bacterial AgentsDNA PrimersPneumococcal Vaccines

Identifiers

PMID20810803
PMCPMC2929034

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.