Evidence map›Paper›PMID 20802045›Full record

ArticleJournal of bacteriology2010

Comparative genomic characterization of Actinobacillus pleuropneumoniae.

Zhuofei Xu, Xiabing Chen, Lu Li, Tingting Li, Shengyue Wang, Huanchun Chen, Rui Zhou

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Journal of veterinary science · 2026
    Article
  3. Article
  4. Characterization of nonencapsulatedJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2023
    Article
  5. Article
  6. Article
  7. Genetic Diversity ofVeterinary sciences · 2022
    Article
  8. Article
  9. Article
  10. Microbial genomics · 2022
    Article
  11. Article
  12. JMM Profile:Journal of medical microbiology · 2022
    Article
  13. Article
  14. Article
  15. Complete genome forMicrobial genomics · 2021
    Article
  16. Article
  17. Characterization of nontypeableJournal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc · 2020
    Article
  18. Article
  19. Comparative Genomics ofInternational journal of genomics · 2020
    Article
  20. Development ofJournal of veterinary science · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Zhuofei XuDivision of Animal Infectious Disease, State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China.
Xiabing Chen
Lu Li
Tingting Li
Shengyue Wang
Huanchun Chen
Rui Zhou
Huazhong Agricultural University · CNChinese National Human Genome Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Gram-negative bacterium Actinobacillus pleuropneumoniae is the etiologic agent of porcine contagious pleuropneumoniae, a lethal respiratory infectious disease causing great economic losses in the swine industry worldwide. In order to better interpret the genetic background of serotypic diversity, nine genomes of A. pleuropneumoniae reference strains of serovars 1, 2, 4, 6, 9, 10, 11, 12, and 13 were sequenced by using rapid high-throughput approach. Based on 12 genomes of corresponding serovar reference strains including three publicly available complete genomes (serovars 3, 5b, and 7) of this bacterium, we performed a comprehensive analysis of comparative genomics and first reported a global genomic characterization for this pathogen. Clustering of 26,012 predicted protein-coding genes showed that the pan genome of A. pleuropneumoniae consists of 3,303 gene clusters, which contain 1,709 core genome genes, 822 distributed genes, and 772 strain-specific genes. The genome components involved in the biogenesis of capsular polysaccharide and lipopolysaccharide O antigen relative to serovar diversity were compared, and their genetic diversity was depicted. Our findings shed more light on genomic features associated with serovar diversity of A. pleuropneumoniae and provide broader insight into both pathogenesis research and clinical/epidemiological application against the severe disease caused by this swine pathogen.

Indexed as

Genome, BacterialGenomicsActinobacillus InfectionsActinobacillus pleuropneumoniaeAnimalsBacterial ProteinsBacterial Typing TechniquesChromosome MappingChromosomes, BacterialCluster AnalysisGene Expression Regulation, BacterialMolecular Sequence DataPhylogenySequence AlignmentSpecies SpecificitySwineBacterial Proteins

Identifiers

PMID20802045
PMCPMC2953695
OpenAlexW1983476090

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.