Evidence map›Paper›PMID 20799722›Full record

ArticleBiochemistry2010

Physical trapping of HIV-1 synaptic complex by different structural classes of integrase strand transfer inhibitors.

Krishan K Pandey, Sibes Bera, Ajaykumar C Vora, Duane P Grandgenett

Abstract read
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Multifunctional facets of retrovirus integrase.World journal of biological chemistry · 2015
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. HIV Drug Resistance and the Advent of Integrase Inhibitors.Current infectious disease reports · 2013
    Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Molecular mechanisms of retroviral integrase inhibition and the evolution of viral resistance.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Krishan K PandeyInstitute for Molecular Virology, Saint Louis University Health Sciences Center, 1100 South Grand Boulevard, Saint Louis, Missouri 63104, USA. pandeykk@slu.edu
Sibes Bera
Ajaykumar C Vora
Duane P Grandgenett
Saint Louis University · US

Funding

HIV integrase/DNA complexes and concerted integrationR21AI081629 · NIAID · SAINT LOUIS UNIVERSITY · PI GRANDGENETT, DUANE P · 2009 to 2010
$430k
NIAID NIH HHS R21 AI081629NIAID NIH HHS R21AI081629
6 · The paper itself

Abstract

Raltegravir is an FDA approved inhibitor directed against human immunodeficiency virus type 1 (HIV-1) integrase (IN). In this study, we investigated the mechanisms associated with multiple strand transfer inhibitors capable of inhibiting concerted integration by HIV-1 IN. The results show raltegravir, elvitegravir, MK-2048, RDS 1997, and RDS 2197 all appear to encompass a common inhibitory mechanism by modifying IN-viral DNA interactions. These structurally different inhibitors bind to and inactivate the synaptic complex, an intermediate in the concerted integration pathway in vitro. The inhibitors physically trap the synaptic complex, thereby preventing target DNA binding and thus concerted integration. The efficiency of a particular inhibitor to trap the synaptic complex observed on native agarose gels correlated with its potency for inhibiting the concerted integration reaction, defined by IC(50) values for each inhibitor. At low nanomolar concentrations (<50 nM), raltegravir displayed a time-dependent inhibition of concerted integration, a property associated with slow-binding inhibitors. Studies of raltegravir-resistant IN mutants N155H and Q148H without inhibitors demonstrated that their capacity to assemble the synaptic complex and promote concerted integration was similar to their reported virus replication capacities. The concerted integration activity of Q148H showed a higher cross-resistance to raltegravir than observed with N155H, providing evidence as to why the Q148H pathway with secondary mutations is the predominant pathway upon prolonged treatment. Notably, MK-2048 is equally potent against wild-type IN and raltegravir-resistant IN mutant N155H, suggesting this inhibitor may bind similarly within their drug-binding pockets.

Indexed as

DNA, ViralHIV-1HumansIntegrase InhibitorsIntegrasesMutationPyrrolidinonesQuinolonesRaltegravir PotassiumVirus ReplicationDNA, ViralelvitegravirIntegrase InhibitorsIntegrasesPyrrolidinonesQuinolonesRaltegravir Potassium

Identifiers

PMID20799722
PMCPMC2965028
OpenAlexW2003191444

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.