Evidence map›Paper›PMID 20797612›Full record

ArticleChemistry & biology2010

The glycerophospho metabolome and its influence on amino acid homeostasis revealed by brain metabolomics of GDE1(-/-) mice.

Florian Kopp, Toru Komatsu, Daniel K Nomura, Sunia A Trauger, Jason R Thomas, Gary Siuzdak, Gabriel M Simon, Benjamin F Cravatt

Abstract read
In one paragraph

Article in Chemistry & biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  3. Article
  4. Article
  5. Aberrant lipid metabolism as a therapeutic target in liver cancer.Expert opinion on therapeutic targets · 2019
    Review
  6. Article
  7. Article
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  14. Ether lipid generating enzyme AGPS alters the balance of structural and signaling lipids to fuel cancer pathogenicity.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Florian KoppDepartment of Chemical Physiology and The Skaggs Institute for Chemical Biology, La Jolla, CA 92037, USA.
Toru Komatsu
Daniel K Nomura
Sunia A Trauger
Jason R Thomas
Gary Siuzdak
Gabriel M Simon
Benjamin F Cravatt
Scripps Research Institute · US

Funding

STRUCTURAL STUDIES OF FAAHP01DA017259 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI BOGER, DALE L, CRAVATT, BENJAMIN F · 2004 to 2013
$10.6M
Chemical Probes for Metabolic Pathway Discovery in Human DiseaseR01CA132630 · NCI · SCRIPPS RESEARCH INSTITUTE, THE · PI CRAVATT, BENJAMIN F · 2007 to 2018
$5.1M
Role of monoacylglycerol lipase in coordinating diverse lipid signaling pathwaysK99DA030908 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI NOMURA, DANIEL · 2010 to 2010
$78k
NCI NIH HHS R01 CA132630NCI NIH HHS R01CA132630NIDA NIH HHS K99 DA030908NIDA NIH HHS P01 DA017259
6 · The paper itself

Abstract

GDE1 is a mammalian glycerophosphodiesterase (GDE) implicated by in vitro studies in the regulation of glycerophophoinositol (GroPIns) and possibly other glycerophospho (GroP) metabolites. Here, we show using untargeted metabolomics that GroPIns is profoundly (>20-fold) elevated in brain tissue from GDE1(-/-) mice. Furthermore, two additional GroP metabolites not previously identified in eukaryotic cells, glycerophosphoserine (GroPSer) and glycerophosphoglycerate (GroPGate), were also highly elevated in GDE1(-/-) brains. Enzyme assays with synthetic GroP metabolites confirmed that GroPSer and GroPGate are direct substrates of GDE1. Interestingly, our metabolomic profiles also revealed that serine (both L-and D-) levels were significantly reduced in brains of GDE1(-/-) mice. These findings designate GroPSer as a previously unappreciated reservoir for free serine in the nervous system and suggest that GDE1, through recycling serine from GroPSer, may impact D-serine-dependent neural signaling processes in vivo.

Indexed as

HomeostasisMetabolomeAmino AcidsAnimalsBrainInositol PhosphatesMaleMass SpectrometryMetabolomicsMicePhosphoric Diester HydrolasesSerineSolubilityWaterAmino Acidsglycerophosphodiester phosphodiesteraseglycerylphosphoinositolInositol PhosphatesPhosphoric Diester HydrolasesSerineWater

Identifiers

PMID20797612
PMCPMC2931592
OpenAlexW2142957220

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.