Evidence map›Paper›PMID 20797610›Full record

ArticleChemistry & biology2010

Functional studies of Plasmodium falciparum dipeptidyl aminopeptidase I using small molecule inhibitors and active site probes.

Edgar Deu, Melissa J Leyva, Victoria E Albrow, Mark J Rice, Jonathan A Ellman, Matthew Bogyo

Open access · greenAbstract read
In one paragraph

Article in Chemistry & biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. A cathepsin C-like protease post-translationally modifiesbioRxiv : the preprint server for biology · 2023
    Article
  5. Article
  6. Targeting theHeliyon · 2022
    Review
  7. Review
  8. Chemoproteomics for Plasmodium Parasite Drug Target Discovery.Chembiochem : a European journal of chemical biology · 2021
    Review
  9. Methods Used to Investigate theFrontiers in cellular and infection microbiology · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Structural Insights Into KeyFrontiers in microbiology · 2019
    Review
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Edgar DeuDepartment of Pathology, Stanford School of Medicine, 300 Pasteur Drive, Stanford, CA 94305, USA.
Melissa J Leyva
Victoria E Albrow
Mark J Rice
Jonathan A Ellman
Matthew Bogyo
Stanford Medicine · USUniversity of California, Berkeley · USYale University · US

Funding

Substrate Activity Screening: A New Approach to Inhibitor DiscoveryR01GM054051 · NIGMS · YALE UNIVERSITY · PI ELLMAN, JONATHAN A · 1997 to 2016
$5.2M
Small Molecule Imaging of Protease ActivityR01EB005011 · NIBIB · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2005 to 2013
$3.0M
Chemically Mapping Malarial Rupture ProteasesR01AI078947 · NIAID · STANFORD UNIVERSITY · PI BOGYO, MATTHEW · 2009 to 2013
$2.0M
Chemical Methods for Ferrous Iron Targeted Drug DeliveryR21AI094433 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BOGYO, MATTHEW, RENSLO, ADAM R · 2011 to 2012
$443k
NIAID NIH HHS R01 AI078947NIAID NIH HHS R21 AI094433NIBIB NIH HHS R01 EB005011NIGMS NIH HHS R01 GM054051Wellcome Trust
6 · The paper itself

Abstract

The widespread resistance of malaria parasites to all affordable drugs has made the identification of new targets urgent. Dipeptidyl aminopeptidases (DPAPs) represent potentially valuable new targets that are involved in hemoglobin degradation (DPAP1) and parasite egress (DPAP3). Here we use activity-based probes to demonstrate that specific inhibition of DPAP1 by a small molecule results in the formation of an immature trophozoite that leads to parasite death. Using computational methods, we designed stable, nonpeptidic covalent inhibitors that kill Plasmodium falciparum at low nanomolar concentrations. These compounds show signs of slowing parasite growth in a murine model of malaria, which suggests that DPAP1 might be a viable antimalarial target. Interestingly, we found that resynthesis and activation of DPAP1 after inhibition is rapid, suggesting that effective drugs would need to sustain DPAP1 inhibition for a period of 2-3 hr.

Indexed as

Catalytic DomainComputational BiologyAnimalsAntiparasitic AgentsCathepsin CCell LineDose-Response Relationship, DrugDrug DesignDrug StabilityFemaleMalariaMicePlasmodium falciparumProtease InhibitorsTrophozoitesAntiparasitic AgentsCathepsin CProtease Inhibitors

Identifiers

PMID20797610
PMCPMC2929396
OpenAlexW1984794626

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.