Evidence map›Paper›PMID 20739463›Full record

ArticleMolecular biology of the cell2010

Expression of the Salmonella spp. virulence factor SifA in yeast alters Rho1 activity on peroxisomes.

Dani B N Vinh, Dennis C Ko, Richard A Rachubinski, John D Aitchison, Samuel I Miller

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Salmonellae interactions with host processes.Nature reviews. Microbiology · 2015
    Review
  4. Salmonella - at home in the host cell.Frontiers in microbiology · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Dani B N VinhDepartment of Medicine, Immunology, Microbiology, and Genome Sciences, University of Washington, Seattle, WA 98195, USA.
Dennis C Ko
Richard A Rachubinski
John D Aitchison
Samuel I Miller
Institute for Systems Biology · USUniversity of Alberta · CAUniversity of Washington · US

Funding

SALMONELLA PATHOGENICITY ISLAND 2 EFFECTOR PROTEINSR01AI048683 · NIAID · UNIVERSITY OF WASHINGTON · PI MILLER, SAMUEL I · 2001 to 2015
$5.1M
NIAID NIH HHS R01 AI048683NIAID NIH HHS R01-AI048683
6 · The paper itself

Abstract

The Salmonella typhimurium effector protein SifA regulates the assembly and tubulation of the Salmonella phagosome. SifA localizes to the phagosome and interacts with the membrane via its prenylated tail. SifA is a structural homologue of another bacterial effector that acts as a GTP-exchange factor for Rho family GTPases and can bind GDP-RhoA. When coexpressed with a bacterial lipase that is activated by RhoA, SifA can induce tubulation of mammalian endosomes. In an effort to develop a genetic system to study SifA function, we expressed SifA and characterized its activity in yeast. GFP-SifA predominantly localized to yeast peroxisomal membranes. Under peroxisome-inducing conditions, GFP-SifA reduced the number of free peroxisomes and promoted the formation of large peroxisomes with membrane invaginations. GFP-SifA activity depended on the recruitment to peroxisomes of wild-type Rho1p and Pex25p, a receptor for Rho1p. GFP-SifA could also rescue the actin organization defects in pex25Δ and rho1 mutants, suggesting that SifA may recruit and potentiate Rho1p activity. We reexamined the distribution of GFP-SifA in mammalian cells and found the majority colocalizing with LAMP1-positive compartment and not with the peroxisomal marker PMP70. Together, these data suggest that SifA may use a similar mode of action via Rho proteins to alter yeast peroxisomal and mammalian endosomal membranes. Further definition of SifA activity on yeast peroxisomes could provide more insight into its role in regulating host membrane dynamics and small GTPases.

Indexed as

ActinsAnimalsBacterial ProteinsCell CompartmentationCHO CellsCricetinaeCricetulusEndosomesGlycoproteinsGreen Fluorescent ProteinsIntracellular MembranesMicroscopy, FluorescenceMutationOrganelle ShapePeroxisomesProtein TransportActinsBacterial ProteinsGlycoproteinsGreen Fluorescent ProteinsRecombinant Fusion ProteinsRHO1 protein, S cerevisiaerho GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSifA protein, SalmonellaVirulence Factors

Identifiers

PMID20739463
PMCPMC2954121
OpenAlexW2153035915

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.