BioRuby: bioinformatics software for the Ruby programming language.

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

Who cites it

93 citing papers in PubMed.

1. Molecular clock dating using complex mixture models: applied to ancient symbionts.Molecular biology and evolution · 2026
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2. taxalogue: a toolkit to create comprehensive CO1 reference databases.PeerJ · 2023
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3. A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar.PLoS computational biology · 2022
   Article
4. Estimating the Divergence Times of Alphaproteobacteria Based on Mitochondrial Endosymbiosis and Eukaryotic Fossils.Methods in molecular biology (Clifton, N.J.) · 2022
   Article
5. Evolutionary origin and ecological implication of a unique nif island in free-living Bradyrhizobium lineages.The ISME journal · 2021
   Article
6. Critical assessment of coiled-coil predictions based on protein structure data.Scientific reports · 2021
   Article
7. Dating Alphaproteobacteria evolution with eukaryotic fossils.Nature communications · 2021
   Article
8. PDB-tools web: A user-friendly interface for the manipulation of PDB files.Proteins · 2021
   Article
9. Evolutionary Trajectory of the Replication Mode of Bacterial Replicons.mBio · 2021
   Article
10. A haplotype-led approach to increase the precision of wheat breeding.Communications biology · 2020
    Article
11. Evolutionary Timeline and Genomic Plasticity Underlying the Lifestyle Diversity inmSystems · 2020
    Article
12. BioShell 3.0: Library for Processing Structural Biology Data.Biomolecules · 2020
    Article
13. RNA-seq, de novo transcriptome assembly and flavonoid gene analysis in 13 wild and cultivated berry fruit species with high content of phenolics.BMC genomics · 2019
    Article
14. Fine-Tuning the Expression of Duplicate Genes by Translational Regulation inFrontiers in plant science · 2019
    Article
15. Sharing Programming Resources Between Bio* Projects.Methods in molecular biology (Clifton, N.J.) · 2019
    Article
16. TogoGenome/TogoStanza: modularized Semantic Web genome database.Database : the journal of biological databases and curation · 2019
    Article
17. How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications.Briefings in bioinformatics · 2018
    Article
18. MTBseq: a comprehensive pipeline for whole genome sequence analysis ofPeerJ · 2018
    Article
19. Phylogenomic analysis demonstrates a pattern of rare and long-lasting concerted evolution in prokaryotes.Communications biology · 2018
    Article
20. Waggawagga-CLI: A command-line tool for predicting stable single α-helices (SAH-domains), and the SAH-domain distribution across eukaryotes.PloS one · 2018
    Article

33 more citing papers are in PubMed but not listed here.

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

Authors and funding

6 authors.

Funding

No grant is acknowledged in the PubMed record.

Abstract

Indexed as