Evidence map›Paper›PMID 20738874›Full record

ArticleBMC molecular biology2010

Functional and cellular characterization of human Retinoic Acid Induced 1 (RAI1) mutations associated with Smith-Magenis Syndrome.

Paulina Carmona-Mora, Carolina A Encina, Cesar P Canales, Lei Cao, Jessica Molina, Pamela Kairath, Juan I Young, Katherina Walz

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Paulina Carmona-MoraJohn P Hussman Institute for Human Genomics, Miller School of Medicine, University of Miami, Miami, Florida, USA.
Carolina A Encina
Cesar P Canales
Lei Cao
Jessica Molina
Pamela Kairath
Juan I Young
Katherina Walz
Centro de Estudios Científicos · CLUniversity of Miami · USAustral University of Chile · CL

Funding

Exploring the Reversibilty of the Smith-Magenis Syndrome PhenotypeR03TW007536 · FIC · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2006 to 2008
$124k
FIC NIH HHS R03 TW07536
6 · The paper itself

Abstract

backgroundSmith-Magenis Syndrome is a contiguous gene syndrome in which the dosage sensitive gene has been identified: the Retinoic Acid Induced 1 (RAI1). Little is known about the function of human RAI1.

resultsWe generated the full-length cDNA of the wild type protein and five mutated forms: RAI1-HA 2687delC, RAI1-HA 3103delC, RAI1 R960X, RAI1-HA Q1562R, and RAI1-HA S1808N. Four of them have been previously associated with SMS clinical phenotype. Molecular weight, subcellular localization and transcription factor activity of the wild type and mutant forms were studied by western blot, immunofluorescence and luciferase assays respectively. The wild type protein and the two missense mutations presented a higher molecular weight than expected, localized to the nucleus and activated transcription of a reporter gene. The frameshift mutations generated a truncated polypeptide with transcription factor activity but abnormal subcellular localization, and the same was true for the 1-960aa N-terminal half of RAI1. Two different C-terminal halves of the RAI1 protein (1038aa-end and 1229aa-end) were able to localize into the nucleus but had no transactivation activity.

conclusionOur results indicate that transcription factor activity and subcellular localization signals reside in two separate domains of the protein and both are essential for the correct functionality of RAI1. The pathogenic outcome of some of the mutated forms can be explained by the dissociation of these two domains.

Indexed as

MutationAnimalsCell LineChromosome MappingDNA Mutational AnalysisGene DosageGenes, ReporterHumansMiceMolecular Sequence DataSmith-Magenis SyndromeTrans-ActivatorsTranscription FactorsRAI1 protein, humanRai1 protein, mouseTrans-ActivatorsTranscription Factors

Identifiers

PMID20738874
PMCPMC2939504
OpenAlexW2053006847

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.