Evidence map›Paper›PMID 20736413›Full record

ArticlePhysiological genomics2010

Alterations in the proteome of the NHERF1 knockout mouse jejunal brush border membrane vesicles.

M Donowitz, S Singh, P Singh, F F Salahuddin, Y Chen, M Chakraborty, R Murtazina, M Gucek, R N Cole, N C Zachos and 10 more

Open access · greenAbstract read
In one paragraph

Article in Physiological genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Loss of the NaThe American journal of pathology · 2019
    Article
  3. Article
  4. Article
  5. Small intestinal ion transport.Current opinion in gastroenterology · 2012
    Review
  6. Article
  7. Non-systemic drugs: a critical review.Current pharmaceutical design · 2012
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 4 countries.

M DonowitzDepartment of Medicine, Div. of Gastroenterology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205-2195, USA. mdonowit@jhmi.edu
S Singh
P Singh
F F Salahuddin
Y Chen
M Chakraborty
R Murtazina
M Gucek
R N Cole
N C Zachos
O Kovbasnjuk
N Broere
W G Smalley-Freed
A B Reynolds
A L Hubbard
U Seidler
E Weinman
H R de Jonge
B M Hogema
X Li
Immunovaccine (Canada) · CAErasmus MC · NLVanderbilt University · USJohns Hopkins Medicine · USMedizinische Hochschule Hannover · DEUniversity of Maryland, Baltimore · US

Funding

Proteomics CoreZICHL005903 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI GUCEK, MARJAN · 2009 to 2022
$23.3M
Two-Photon Microscopy Imaging CoreP01DK072084 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI HUBBARD, ANN · 2006 to 2013
$12.7M
DIARRHEAL DISEASES: A PHYSIOLOGIC APPROACH TO TREATMENTR01DK026523 · NIDDK · TUFTS MEDICAL CENTER · PI DONOWITZ, MARK · 1986 to 2016
$7.8M
PDZ Domain Proteins and NHE3 RegulationR01DK061765 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK, TSE, CHUNG-MING · 2004 to 2013
$4.7M
Hopkins Digestive Diseases Research Development CenterR24DK064388 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK · 2003 to 2010
$4.6M
PLCgamma regulates HNE3 activity through direct binding and dynamic complexesK01DK080930 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI ZACHOS, NICHOLAS CONSTANTINE · 2008 to 2011
$587k
Intracellular Calcium Regulated NHE3 EndocytosisR03DK091482 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI ZACHOS, NICHOLAS CONSTANTINE · 2011 to 2012
$164k
NIDDK NIH HHS K01 DK080930NIDDK NIH HHS P01-DK-72084NIDDK NIH HHS R01 DK061765NIDDK NIH HHS R01-DK-26523NIDDK NIH HHS R01-DK-61765NIDDK NIH HHS R03 DK091482NIDDK NIH HHS R24-DK-64388
6 · The paper itself

Abstract

Na/H exchanger regulatory factor 1 (NHERF1) is a scaffold protein made up of two PDZ domains and an ERM binding domain. It is in the brush border of multiple epithelial cells where it modulates 1) Na absorption by regulating NHE3 complexes and cytoskeletal association, 2) Cl secretion through trafficking of CFTR, and 3) Na-coupled phosphate absorption through membrane retention of NaPi2a. To further understand the role of NHERF1 in regulation of small intestinal Na absorptive cell function, with emphasis on apical membrane transport regulation, quantitative proteomic analysis was performed on brush border membrane vesicles (BBMV) prepared from wild-type (WT) and homozygous NHERF1 knockout mouse jejunal villus Na absorptive cells. Jejunal architecture appeared normal in NHERF1 null; however, there was increased proliferative activity, as indicated by increased crypt BrdU staining. LC-MS/MS analysis using iTRAQ to compare WT and NHERF1 null BBMV identified 463 proteins present in both WT and NHERF1 null BBMV of simultaneously prepared and studied samples. Seventeen proteins had an altered amount of expression between WT and NHERF1 null in two or more separate preparations, and 149 total proteins were altered in at least one BBMV preparation. The classes of the majority of proteins altered included transport proteins, signaling and trafficking proteins, and proteins involved in proliferation and cell division. Affected proteins also included tight junction and adherens junction proteins, cytoskeletal proteins, as well as metabolic and BB digestive enzymes. Changes in abundance of several proteins were confirmed by immunoblotting [increased CEACAM1, decreased ezrin (p-ezrin), NHERF3, PLCβ3, E-cadherin, p120, β-catenin]. The changes in the jejunal BBMV proteome of NHERF1 null mice are consistent with a more complex role of NHERF1 than just forming signaling complexes and anchoring proteins to the apical membrane and include at least alterations in proteins involved in transport, signaling, and proliferation.

Indexed as

Animalsbeta CateninCadherinsChromatography, Ion ExchangeFemaleImmunoblottingImmunohistochemistryJejunumMaleMiceMice, Inbred C57BLMice, KnockoutMicroscopy, ElectronMicrovilliPhosphoproteinsProteomebeta CateninCadherinsPhosphoproteinsProteomesodium-hydrogen exchanger regulatory factorSodium-Hydrogen Exchangers

Identifiers

PMID20736413
PMCPMC3008364
OpenAlexW4234455852

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.