Evidence map›Paper›PMID 20735847›Full record

ArticleMalaria journal2010

Identification and localization of minimal MHC-restricted CD8+ T cell epitopes within the Plasmodium falciparum AMA1 protein.

Martha Sedegah, Yohan Kim, Bjoern Peters, Shannon McGrath, Harini Ganeshan, Jennylynn Lejano, Esteban Abot, Glenna Banania, Maria Belmonte, Renato Sayo and 13 more

Open access · goldAbstract read
In one paragraph

Article in Malaria journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 7 institutions in 3 countries.

Martha SedegahUSMMVP, Malaria Department, NMRC, Silver Spring, MD 20910, USA.
Yohan Kim
Bjoern Peters
Shannon McGrath
Harini Ganeshan
Jennylynn Lejano
Esteban Abot
Glenna Banania
Maria Belmonte
Renato Sayo
Fouzia Farooq
Denise L Doolan
David Regis
Cindy Tamminga
Ilin Chuang
Joseph T Bruder
C Richter King
Christian F Ockenhouse
Bart Faber
Edmond Remarque
Michael R Hollingdale
Thomas L Richie
Alessandro Sette
Naval Medical Research Command · USHenry M. Jackson Foundation · USLa Jolla Institute for Immunology · USBiomedical Primate Research Centre · NLGenVec · USWalter Reed Army Institute of Research · USQIMR Berghofer Medical Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlasmodium falciparum apical membrane antigen-1 (AMA1) is a leading malaria vaccine candidate antigen that is expressed by sporozoite, liver and blood stage parasites. Since CD8+ T cell responses have been implicated in protection against pre-erythrocytic stage malaria, this study was designed to identify MHC class I-restricted epitopes within AMA1.

methodsA recombinant adenovirus serotype 5 vector expressing P. falciparum AMA1 was highly immunogenic when administered to healthy, malaria-naive adult volunteers as determined by IFN-γ ELISpot responses to peptide pools containing overlapping 15-mer peptides spanning full-length AMA1. Computerized algorithms (NetMHC software) were used to predict minimal MHC-restricted 8-10-mer epitope sequences within AMA1 15-mer peptides active in ELISpot. A subset of epitopes was synthesized and tested for induction of CD8+ T cell IFN-γ responses by ELISpot depletion and ICS assays. A 3-dimensional model combining Domains I + II of P. falciparum AMA1 and Domain III of P. vivax AMA1 was used to map these epitopes.

resultsFourteen 8-10-mer epitopes were predicted to bind to HLA supertypes A01 (3 epitopes), A02 (4 epitopes), B08 (2 epitopes) and B44 (5 epitopes). Nine of the 14 predicted epitopes were recognized in ELISpot or ELISpot and ICS assays by one or more volunteers. Depletion of T cell subsets confirmed that these epitopes were CD8+ T cell-dependent. A mixture of the 14 minimal epitopes was capable of recalling CD8+ T cell IFN-γ responses from PBMC of immunized volunteers. Thirteen of the 14 predicted epitopes were polymorphic and the majority localized to the more conserved front surface of the AMA1 model structure.

conclusionsThis study predicted 14 and confirmed nine MHC class I-restricted CD8+ T cell epitopes on AMA1 recognized in the context of seven HLA alleles. These HLA alleles belong to four HLA supertypes that have a phenotypic frequency between 23% - 100% in different human populations.

Indexed as

Epitope MappingAdenoviruses, HumanAdultAntigens, ProtozoanCD8-Positive T-LymphocytesEpitopes, T-LymphocyteGenetic VectorsHuman ExperimentationHumansInterferon-gammaMalaria VaccinesMembrane ProteinsProtozoan ProteinsAntigens, Protozoanapical membrane antigen I, PlasmodiumEpitopes, T-LymphocyteInterferon-gammaMalaria VaccinesMembrane ProteinsProtozoan Proteins

Identifiers

PMID20735847
PMCPMC2939619
OpenAlexW2126092201

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.