Evidence map›Paper›PMID 20733041›Full record

ArticleAntimicrobial agents and chemotherapy2010

vanM, a new glycopeptide resistance gene cluster found in Enterococcus faecium.

Xiaogang Xu, Dongfang Lin, Guoquan Yan, Xinyu Ye, Shi Wu, Yan Guo, Demei Zhu, Fupin Hu, Yingyuan Zhang, Fu Wang and 2 more

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
7.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 203 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genomic characterization of vancomycin-resistantFrontiers in microbiology · 2026
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  5. Rapid prediction of vancomycin-resistantFrontiers in microbiology · 2026
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  6. Article
  7. Genomic Characterization of Multiple Antibiotic-ResistantAntibiotics (Basel, Switzerland) · 2025
    Article
  8. Antimicrobial resistance and virulence potential of non-faecium and non-faecalis enterococci isolated from canine rectal swabs.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Molecular Characterization of Linezolid-Non-SusceptibleInfection and drug resistance · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Antibiotics (Basel, Switzerland) · 2022
    Review
  18. Emergence of Clinical Clostridioides difficile Isolates With Decreased Susceptibility to Vancomycin.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Article
  19. Review
  20. Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Xiaogang XuInstitute of Antibiotics, Huashan Hospital, Fudan University, 12 M. Wulumuqi Rd., Shanghai, P. R. China.
Dongfang Lin
Guoquan Yan
Xinyu Ye
Shi Wu
Yan Guo
Demei Zhu
Fupin Hu
Yingyuan Zhang
Fu Wang
George A Jacoby
Minggui Wang
Huashan Hospital · CNFudan University · CNLahey Hospital and Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since glycopeptide-resistant enterococci (GRE) were reported in 1988, they have appeared in hospitals worldwide. Seven van gene cluster types (vanA, vanB, vanC, vanD, vanE, vanG, and vanL) are currently known. We investigated a clinical strain of Enterococcus faecium Efm-HS0661 that was isolated in 2006 from an inpatient with intra-abdominal infection in Shanghai. It was resistant to most antimicrobials, including vancomycin (MIC, >256 μg/ml) and teicoplanin (MIC, 96 μg/ml). Glycopeptide resistance could be transferred to E. faecium BM4105RF by conjugation. The donor and its transconjugant were negative by PCR for the known van genes. By cloning and primer walk sequencing, we discovered a novel van gene cluster, designated vanM. The vanM ligase gene was 1,032-bp in length and encoded a 343-amino-acid protein that shared 79.9, 70.8, 66.3, and 78.8% amino acid identity with VanA, VanB, VanD, and VanF, respectively. Although the vanM DNA sequence was closest to vanA, the organization of the vanM gene cluster was most similar to that of vanD. Upstream from the vanM cluster was an IS1216-like element, which may play a role in the dissemination of this resistance determinant. Liquid chromatography-mass spectrometry analysis of peptidoglycan precursors extracted from the VanM-type strain Efm-HS0661 treated with vancomycin or teicoplanin revealed a modified precursor (UDP-N-acetylmuramic acid [MurNAc]-tetrapeptide-D-Lac), indicating that VanM, like VanA, confers glycopeptide resistance by the inducible synthesis of precursor ending in D-Ala-D-Lac.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsChromatography, LiquidDrug Resistance, BacterialElectrophoresis, Gel, Pulsed-FieldEnterococcus faeciumGlycopeptidesMass SpectrometryMicrobial Sensitivity TestsMolecular Sequence DataMultigene FamilyPolymerase Chain ReactionAnti-Bacterial AgentsBacterial ProteinsGlycopeptides

Identifiers

PMID20733041
PMCPMC2976141
OpenAlexW2115018455

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.