Evidence map›Paper›PMID 20733004›Full record

ArticleMolecular and cellular biology2010

Drosophila transcription factor Tramtrack69 binds MEP1 to recruit the chromatin remodeler NuRD.

B Ashok Reddy, Prashanth Kumar Bajpe, Andrew Bassett, Yuri M Moshkin, Elena Kozhevnikova, Karel Bezstarosti, Jeroen A A Demmers, Andrew A Travers, C Peter Verrijzer

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In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 52 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

B Ashok ReddyDepartment of Biochemistry, Center for Biomedical Genetics, Erasmus University Medical Center, Rotterdam, Netherlands.
Prashanth Kumar Bajpe
Andrew Bassett
Yuri M Moshkin
Elena Kozhevnikova
Karel Bezstarosti
Jeroen A A Demmers
Andrew A Travers
C Peter Verrijzer
Erasmus University Rotterdam · NLMRC Laboratory of Molecular Biology · GB

Funding

Medical Research Council MC_U105184288
6 · The paper itself

Abstract

ATP-dependent chromatin-remodeling complexes (remodelers) are essential regulators of chromatin structure and gene transcription. How remodelers can act in a gene-selective manner has remained enigmatic. A yeast two-hybrid screen for proteins binding the Drosophila transcription factor Tramtrack69 (TTK69) identified MEP1. Proteomic characterization revealed that MEP1 is a tightly associated subunit of the NuRD remodeler, harboring the Mi2 enzymatic core ATPase. In addition, we identified the fly homolog of human Deleted in oral cancer 1 (DOC1), also known as CDK2-associated protein 1 (CDK2AP1), as a bona fide NuRD subunit. Biochemical and genetic assays supported the functional association between MEP1, Mi2, and TTK69. Genomewide expression analysis established that TTK69, MEP1, and Mi2 cooperate closely to control transcription. The TTK69 transcriptome profile correlates poorly with remodelers other than NuRD, emphasizing the selectivity of remodeler action. On the genes examined, TTK69 is able to bind chromatin in the absence of NuRD, but targeting of NuRD is dependent on TTK69. Thus, there appears to be a hierarchical relationship in which transcription factor binding precedes remodeler recruitment.

Indexed as

AnimalsBase SequenceChromatin Assembly and DisassemblyDNA PrimersDrosophilaDrosophila ProteinsGene Expression ProfilingGenes, InsectHumansIn Vitro TechniquesMi-2 Nucleosome Remodeling and Deacetylase ComplexProtein BindingProtein Interaction MappingProtein SubunitsRepressor ProteinsTwo-Hybrid System TechniquesDNA PrimersDrosophila ProteinsMi-2 Nucleosome Remodeling and Deacetylase ComplexProtein SubunitsRepressor Proteinsttk protein, Drosophila

Identifiers

PMID20733004
PMCPMC2953047
OpenAlexW2113508405

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.