Evidence map›Paper›PMID 20731629›Full record

ArticleAddiction biology2011

Cell-specific effects of variants of the 68-base pair tandem repeat on prodynorphin gene promoter activity.

Morgane Rouault, David A Nielsen, Ann Ho, Mary Jeanne Kreek, Vadim Yuferov

Abstract read
In one paragraph

Article in Addiction biology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Trial
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  4. Review
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Gender-specific association of functionalNeuropsychiatric disease and treatment · 2018
    Article
  11. Article
  12. Article
  13. Genetics of opiate addiction.Current psychiatry reports · 2014
    Review
  14. Article
  15. Review
  16. Review
  17. Article
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  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Morgane RouaultThe Laboratory of the Biology of Addictive Diseases, The Rockefeller University, USA.
David A Nielsen
Ann Ho
Mary Jeanne Kreek
Vadim Yuferov
Rockefeller University · USBaylor College of Medicine · US

Funding

ULTRASTUCTURE, RECEPTORS, AND GENE EXPRESSIONP60DA005130 · NIDA · ROCKEFELLER UNIVERSITY · PI KREEK, MARY J · 2002 to 2012
$30.6M
HIV and Psychiatric Comorbidity: Selected Genetic and Epigenetic FactorsR01MH079880 · NIMH · ROCKEFELLER UNIVERSITY · PI KREEK, MARY J · 2006 to 2010
$3.0M
NIDA NIH HHS P60 DA005130NIMH NIH HHS MH79880NIMH NIH HHS R01 MH079880PHS HHS P60-05130
6 · The paper itself

Abstract

A polymorphic 68-bp tandem repeat has been identified within the promoter of the human prodynorphin (PDYN) gene. We found that this 68-bp repeat in the PDYN promoter occurs naturally up to five times. We studied the effect of the number of 68-bp repeats, and of a SNP (rs61761346) found within the repeat on PDYN gene promoter activity. Thirteen promoter forms, different naturally occurring combinations of repeats and the internal SNP, were cloned upstream of the luciferase reporter gene, transfected into human SK-N-SH, H69, or HEK293 cells. Cells were then stimulated with TPA or caffeine. We found cell-specific effects of the number of 68-bp repeats on the transcriptional activity of the PDYN promoter. In SK-N-SH and H69 cells, three or four repeats led to lower expression of luciferase than did one or two repeats. The opposite effect was found in HEK293 cells. The SNP also had an effect on PDYN gene expression in both SK-N-SH and H69 cells; promoter forms with the A allele had significantly higher expression than promoter forms with the G allele. These results further our understanding of the complex transcriptional regulation of the PDYN gene promoter.

Indexed as

AlcoholismAllelesBase PairingCell LineCloning, MolecularCocaine-Related DisordersEnkephalinsGenetic VariationGenotypeHEK293 CellsHumansPolymorphism, GeneticPolymorphism, Single NucleotidePromoter Regions, GeneticProtein PrecursorsTandem Repeat SequencesEnkephalinspreproenkephalinProtein Precursors

Identifiers

PMID20731629
PMCPMC2995810
OpenAlexW1616671031

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.