Evidence map›Paper›PMID 20730510›Full record

ArticleMolecular biotechnology2011

Isolation of the 5'-end of plant genes from genomic DNA by TATA-box-based degenerate primers.

Yanwu Guo, Lanqing Ma, Yunpeng Ji, Gaobin Pu, Benye Liu, Zhigao Du, Guofeng Li, Hechun Ye, Hong Wang

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular biotechnology, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yanwu GuoKey Laboratory of Photosynthesis and Environmental Molecular Physiology, Institute of Botany, The Chinese Academy of Sciences, No. 20 Nanxincun, Haidian District, Beijing 100093, China.
Lanqing Ma
Yunpeng Ji
Gaobin Pu
Benye Liu
Zhigao Du
Guofeng Li
Hechun Ye
Hong Wang
Chinese Academy of Sciences · CNInstitute of Botany · CNBeijing University of Agriculture · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report a rapid and simple method for isolating the 5'-end of plant genes from genomic DNA by polymerase chain reaction (PCR) with TATA-box-based degenerate primers (TDPs). The TDPs were specially designed according to the TATA box, which is conserved in the promoter region of most plant genes. The unknown 5'-ends of several genes in different plants were isolated by PCR with gene-specific primers of the known core fragment and the TDPs. Our method does not require the arduous RNA manipulations and expensive enzyme treatments of the popular rapid amplification of cDNA ends (RACE) and its variants, and so could be a cheap practical alternative.

Indexed as

DNA PrimersGenes, PlantDNA, ComplementaryDNA, PlantFallopia japonicaGenome, PlantPlant LeavesPolymerase Chain ReactionTATA BoxDNA, ComplementaryDNA, PlantDNA Primers

Identifiers

PMID20730510
OpenAlexW2002116248

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.