Evidence map›Paper›PMID 20729628›Full record

ArticlePlant signaling & behavior2010

Genes co-expressed with CPSAR1 identified using ATTED-II.

Nadir Zaman Khan, Christel Garcia, Henrik Aronsson

Abstract read
In one paragraph

Article in Plant signaling & behavior, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Nadir Zaman KhanDepartment of Plant and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden.
Christel Garcia
Henrik Aronsson

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of interacting proteins will help to investigate further the relationship between CPSAR1 and the vesicle transport system or the ribosomes. Thus, we adopted a bioinformatic approach, using the publicly available Arabidopsis thaliana trans-factor and cis-element prediction database, ATTED-II (http://atted.jp/), to identify putative protein interactors. The proteins directly linked to CPSAR1 were almost exclusively nucleus encoded and several were involved in protein synthesis of which three were thylakoid localized. The list of putative interacting proteins does not exclude any of the previous proposed actions of CPSAR1 but encourage more detailed examination of the role of CPSAR1.

Indexed as

Gene ExpressionGenes, PlantArabidopsisArabidopsis ProteinsCell NucleusChloroplast ProteinsComputational BiologyDatabases, GeneticProtein BiosynthesisRibosomesThylakoidsArabidopsis ProteinsChloroplast ProteinsCPSAR1 protein, Arabidopsis

Identifiers

PMID20729628
PMCPMC3115088

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.