ArticleThe Plant cell2010
Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris.
Article in The Plant cell, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- Transcriptome-wide identification and systematic analysis of the Retrotransposon genes and their roles in ginsenoside biosynthesis in Panax ginseng.BMC plant biology · 2025Article
- Dissecting the temporal genetic networks programming soybean embryo development from embryonic morphogenesis to post-germination.Plant cell reports · 2024Article
- Genetic Diversity of Transcription Factor Genes inFrontiers in plant science · 2022Article
- Impact of Chromosomal Rearrangements on the Interpretation of Lupin Karyotype Evolution.Genes · 2019Article
- Common Bean Subtelomeres Are Hot Spots of Recombination and Favor Resistance Gene Evolution.Frontiers in plant science · 2018Article
- Natural rhizobial diversity helps to reveal genes and QTLs associated with biological nitrogen fixation in common bean.AIMS microbiology · 2017Review
- Integration of Lupinus angustifolius L. (narrow-leafed lupin) genome maps and comparative mapping within legumes.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016Article
- Identification and characterization of large DNA deletions affecting oil quality traits in soybean seeds through transcriptome sequencing analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Dynamics of a Novel Highly Repetitive CACTA Family in Common Bean (Phaseolus vulgaris).G3 (Bethesda, Md.) · 2016Article
- Highly distinct chromosomal structures in cowpea (Vigna unguiculata), as revealed by molecular cytogenetic analysis.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2016Article
- Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.The Plant cell · 2016Review
- Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01.BMC genomics · 2016Article
- A First Glimpse of Wild Lupin Karyotype Variation As Revealed by Comparative Cytogenetic Mapping.Frontiers in plant science · 2016Article
- The impacts of polyploidy, geographic and ecological isolations on the diversification of Panax (Araliaceae).BMC plant biology · 2015Article
- Genome-wide annotation and characterization of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean (Phaseolus vulgaris), and their orthologues of Arabidopsis thaliana.Journal of experimental botany · 2015Article
- Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants.BMC genomics · 2015Article
- Genome resilience and prevalence of segmental duplications following fast neutron irradiation of soybean.Genetics · 2014Article
- An RNA-Seq based gene expression atlas of the common bean.BMC genomics · 2014Article
- Global dissection of alternative splicing in paleopolyploid soybean.The Plant cell · 2014Article
- Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons.PloS one · 2014Article
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5 authors.
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Abstract
Soybean (Glycine max) has undergone at least two rounds of polyploidization, resulting in a paleopolyploid genome that is a mosaic of homoeologous regions. To determine the structural and functional impact of these duplications, we sequenced two ~1-Mb homoeologous regions of soybean, Gm8 and Gm15, derived from the most recent ~13 million year duplication event and the orthologous region from common bean (Phaseolus vulgaris), Pv5. We observed inversions leading to major structural variation and a bias between the two chromosome segments as Gm15 experienced more gene movement (gene retention rate of 81% in Gm15 versus 91% in Gm8) and a nearly twofold increase in the deletion of long terminal repeat (LTR) retrotransposons via solo LTR formation. Functional analyses of Gm15 and Gm8 revealed decreases in gene expression and synonymous substitution rates for Gm15, for instance, a 38% increase in transcript levels from Gm8 relative to Gm15. Transcriptional divergence of homoeologs was found based on expression patterns among seven tissues and developmental stages. Our results indicate asymmetric evolution between homoeologous regions of soybean as evidenced by structural changes and expression variances of homoeologous genes.
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