Evidence map›Paper›PMID 20728108›Full record

ArticleThe Journal of urology2010

Inaccurate reporting of mineral composition by commercial stone analysis laboratories: implications for infection and metabolic stones.

Amy E Krambeck, Naseem F Khan, Molly E Jackson, James E Lingeman, James A McAteer, James C Williams

Open access · greenAbstract read
In one paragraph

Article in The Journal of urology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Amy E KrambeckMethodist Hospital Institute for Kidney Stone Disease, Department of Anatomy and Cell Biology, Indiana University, Indianapolis, Indiana 46202-5120, USA.
Naseem F Khan
Molly E Jackson
James E Lingeman
James A McAteer
James C Williams
Indiana University – Purdue University Indianapolis · USHouston Methodist · USMethodist Hospital · US

Funding

The Structural Basis of Kidney Stone FragilityR01DK059933 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI WILLIAMS, JAMES C · 2004 to 2011
$2.4M
NIDDK NIH HHS DK59933NIDDK NIH HHS R01 DK059933
6 · The paper itself

Abstract

purposeWe determined the accuracy of stone composition analysis at commercial laboratories. MATERIALS AND

methodsA total of 25 human renal stones with infrared spectroscopy determined composition were fragmented into aliquots and studied with micro computerized tomography to ensure fragment similarity. Representative fragments of each stone were submitted to 5 commercial stone laboratories for blinded analysis.

resultsAll laboratories agreed on the composition of 6 pure stones. Only 2 of 4 stones (50%) known to contain struvite were identified as struvite at all laboratories. Struvite was reported as a component by some laboratories for 4 stones previously determined not to contain struvite. Overall there was disagreement regarding struvite in 6 stones (24%). For 9 calcium oxalate stones all laboratories reported some mixture of calcium oxalate but the quantity of subtypes differed significantly among laboratories. In 6 apatite containing stones apatite was missed by the laboratories in 20% of samples. None of the laboratories identified atazanavir in a stone containing that antiviral drug. One laboratory reported protein in every sample while all others reported it in only 1. Nomenclature for apatite differed among laboratories with 1 reporting apatite as carbonate apatite and never hydroxyapatite, another never reporting carbonate apatite and always reporting hydroxyapatite, and a third reporting carbonate apatite as apatite with calcium carbonate.

conclusionsCommercial laboratories reliably recognize pure calculi. However, variability in the reporting of mixed calculi suggests a problem with the accuracy of stone analysis results. There is also a lack of standard nomenclature used by laboratories.

Indexed as

Clinical Laboratory TechniquesHumansMineralsReproducibility of ResultsSpectroscopy, Fourier Transform InfraredUrinary CalculiMinerals

Identifiers

PMID20728108
PMCPMC3164359
OpenAlexW2088476074

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.